PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G022781.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 796aa MW: 92233.7 Da PI: 6.001

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G022781.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.8	1.2e-11	122	171	38	88
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 eg+r++++++ ++ r++r+etrtgC a++ ++++ dgk++vt++e++HnH+ HL.SW.v1.0.G022781.1 122 EGYRRKDRRD-VNVRKHRKETRTGCLAHMIITRQPDGKYRVTHFESQHNHD 171 6888888888.999************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-9	123	171	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-21	275	350	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
SSEERTKSSH GRGYELRHLK TTENLIRSMD SDDDDFGTLH QENMDVQLKT SKDLDLNVEQ 60 DNRSQKVVHA SCGTHSTFSS KDEVGVDSIL QIGTEFDSDE HAYKFYNKYA RLVGFSVRKD 120 WEGYRRKDRR DVNVRKHRKE TRTGCLAHMI ITRQPDGKYR VTHFESQHNH DNVNPSNVQT 180 LPLQRELSED QYNEADLVED FRPQSKTAFE SMNRQFRIRD SLDDFSFSFN NYLRTERIRD 240 MKEGEAARLM HCFQRQHFEN PSFLYALQLD IDDKFVGVNH HKQVVIFAAA LLYDDTVESY 300 KWLFRTFLEV MSGKTPKAIH TDQDAAIIEA IHSVLPDTNH CVCVWQMYEN AVKNLSRVVK 360 DTESFASDLK SSIYDSKDEE DFIHTWEAML EKYSLQQNEW LKWMFREQEK WAVHFERVVD 420 EQRYKETEAS DEMDRCMPRL MGKVVLLKHA SDVYTPRAFE VFQQGYEKCL NVVVNQCSEN 480 GPSFEYKTKK FGQSREYNRW TKDARLGSVK ECKEFPTHDN PKMIVANRYK DLGHKILTLS 540 ARASESEEAY VYAYRQLDEV IEGVEKILRL KPEEARAVTS TNTGVNAPEN EQTRVFINGI 600 AIDDKDNRTS QGERAVFING NAIDDKDNRT NQGERAVLDR DHLTILNEKG SATKGIPNVE 660 MHPQSTITCI SNSLPVYVSP PATTGNPIMQ GLYNFEANQV VKSMYQQPNL VIDLQTNTNM 720 YQPPNFYTNQ QDSPSQSQLL QEPLIHNTYP ESVSNTTQLR QEMDLDIPHP HSASFLLFDQ 780 RYRAPDTPYL GHAHK*

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

SSEERTKSSH GRGYELRHLK TTENLIRSMD SDDDDFGTLH QENMDVQLKT SKDLDLNVEQ  60
DNRSQKVVHA SCGTHSTFSS KDEVGVDSIL QIGTEFDSDE HAYKFYNKYA RLVGFSVRKD  120
WEGYRRKDRR DVNVRKHRKE TRTGCLAHMI ITRQPDGKYR VTHFESQHNH DNVNPSNVQT  180
LPLQRELSED QYNEADLVED FRPQSKTAFE SMNRQFRIRD SLDDFSFSFN NYLRTERIRD  240
MKEGEAARLM HCFQRQHFEN PSFLYALQLD IDDKFVGVNH HKQVVIFAAA LLYDDTVESY  300
KWLFRTFLEV MSGKTPKAIH TDQDAAIIEA IHSVLPDTNH CVCVWQMYEN AVKNLSRVVK  360
DTESFASDLK SSIYDSKDEE DFIHTWEAML EKYSLQQNEW LKWMFREQEK WAVHFERVVD  420
EQRYKETEAS DEMDRCMPRL MGKVVLLKHA SDVYTPRAFE VFQQGYEKCL NVVVNQCSEN  480
GPSFEYKTKK FGQSREYNRW TKDARLGSVK ECKEFPTHDN PKMIVANRYK DLGHKILTLS  540
ARASESEEAY VYAYRQLDEV IEGVEKILRL KPEEARAVTS TNTGVNAPEN EQTRVFINGI  600
AIDDKDNRTS QGERAVFING NAIDDKDNRT NQGERAVLDR DHLTILNEKG SATKGIPNVE  660
MHPQSTITCI SNSLPVYVSP PATTGNPIMQ GLYNFEANQV VKSMYQQPNL VIDLQTNTNM  720
YQPPNFYTNQ QDSPSQSQLL QEPLIHNTYP ESVSNTTQLR QEMDLDIPHP HSASFLLFDQ  780
RYRAPDTPYL GHAHK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107406.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024028658.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	W9RWW4	0.0	W9RWW4_9ROSA; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_010107406.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-44	FAR1 family protein