PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022382.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 400aa    MW: 44426.3 Da    PI: 6.1162
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022382.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.5e-111478148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.................TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.................kgRtlkqcksrwqkyl 48
                          rg+WT  Ed++l ++++ +G g W++ +++                   ++R++k+c++rw++yl
  HL.SW.v1.0.G022382.1 14 RGAWTVMEDKILSEYIRVHGEGKWRSLPKRAVvvvkkritdmeyikfagLKRCGKSCRLRWLNYL 78
                          89*************************************************************97 PP
2Myb_DNA-binding52.88.8e-1784127146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T++E+el+++++++lG++ W++Ia +++ gRt++++k++w++
  HL.SW.v1.0.G022382.1  84 RGNITPDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 127
                           7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-21581IPR009057Homeodomain-like
PROSITE profilePS5129410.028978IPR017930Myb domain
SuperFamilySSF466891.21E-2412125IPR009057Homeodomain-like
SMARTSM007171.3E-81380IPR001005SANT/Myb domain
PfamPF002492.8E-101478IPR001005SANT/Myb domain
CDDcd001675.00E-71678No hitNo description
PROSITE profilePS5129424.82179133IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2482133IPR009057Homeodomain-like
SMARTSM007171.2E-1583131IPR001005SANT/Myb domain
PfamPF002495.2E-1584127IPR001005SANT/Myb domain
CDDcd001672.46E-1288129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTVM EDKILSEYIR VHGEGKWRSL PKRAVVVVKK RITDMEYIKF  60
AGLKRCGKSC RLRWLNYLRP DIKRGNITPD EEELIIRLHN LLGNRWSLIA GRLPGRTDNE  120
IKNYWNTNIG KKVHQVQASD NSPKSNNTTS RKPSSKIRCS TSRLEQLRPK PKTTHSGGTS  180
TDGDHEMKTS KTNNSPAGSN SVVRTIATRC TKVVLLSQTE QQNKVVPPDR DNNRITNDHT  240
ASGGISSNDD DDQDCTKSDP AVDDCWLPSV VDYDDQFANN CGQSVVLDSS EITLDVPSYS  300
QLGMMNNNAV DFESSDDHGD YLSEFLNVDF GFVNNGDVAG QVISSSNQKG LACSKSYTTD  360
YDNNNETFFF SQDMMFGVDL ASASASLLSD PVDMDWLHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221213325128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295835e-70KP229583.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB27) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5AGV91e-132A0A2P5AGV9_PARAD; MYB transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-60myb domain protein 3