PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022139.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 271aa    MW: 30411.4 Da    PI: 4.4469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022139.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-182676155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ykGVr +k +g+Wv+eIr p++   r r++lg+++ ae+Aa+a +aa  +l+g
  HL.SW.v1.0.G022139.1 26 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDMAEKAARAFDAAQFCLRG 76
                          79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.21E-292686No hitNo description
PfamPF008473.2E-122676IPR001471AP2/ERF domain
SMARTSM003801.6E-312790IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-202785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-292785IPR001471AP2/ERF domain
PROSITE profilePS5103221.7332784IPR001471AP2/ERF domain
PRINTSPR003676.2E-92839IPR001471AP2/ERF domain
PRINTSPR003676.2E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDEQPHQVVI DHGDHDYQHD NSNQYPKYKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDMA  60
EKAARAFDAA QFCLRGPDAH FNFPDTPPDI AGGQSLTPQE IQVVAARFAN DFSIITASAN  120
CHGNNNLQEQ PNPSYDDPPD QSGGEPSRGG SLSDDVRVRD DGDGFSNMDW SLLNFLDYSS  180
NNDNSYYNSN IHGGHYHGSA GGYYDDFDPF SGIEDDDHRI IQYSGDSILQ AATANDHDNN  240
ITTNAATHDQ DYPFTTSHYY DSHSSFLWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1424841172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834KGVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098396.12e-54ethylene-responsive transcription factor ERF016
TrEMBLA0A2P5DIK92e-72A0A2P5DIK9_PARAD; AP2/ERF domain containing protein
STRINGXP_010098396.16e-54(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-47ERF family protein