PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G021604.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 266aa MW: 28888.7 Da PI: 8.2027

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G021604.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	74	120	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+l+P + +K++Ka+ L +++ +k+L HL.SW.v1.0.G021604.1 74 KNHSEAERRRRERINAHLATLRDLVPCN-----EKMDKATLLAEVISQVKQL 120 58***********************9.....8**********999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.164	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-10	74	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.69E-4	74	123	No hit	No description
SuperFamily	SSF47459	5.63E-14	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-14	75	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-12	77	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MASYSFSNAS YGSDYSSLFD PFSHTGGGGF GGVSKGGSVP HSLVLDSKRG ELVKTPARVG 60 KKGVSEAKAM AALKNHSEAE RRRRERINAH LATLRDLVPC NEKMDKATLL AEVISQVKQL 120 KKKAAESSKG LLIPADDDEV QVERLDDNGT ENDGNLLFKA SVCCSYRVEL LSDVRQALEG 180 LPLKMIKTEI STLGDRLKIS FVFTCCKEKN NDDDAETCRT LVNSVHETLS SVLDKASALA 240 EYSPRTTLLC KRRRISYLDS SSSSC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	ERRRRE
2	250	254	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103039.1	1e-109	putative transcription factor bHLH107
TrEMBL	A0A2P5DKK4	1e-141	A0A2P5DKK4_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010103039.1	1e-108	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8986	31	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	4e-32	bHLH family protein