PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020941.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 356aa    MW: 40679.2 Da    PI: 4.845
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020941.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.61.9e-5661331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatg
  HL.SW.v1.0.G020941.1   6 LPPGFRFHPTDEELVAYYLDRKITGQTIEL-EIIPEVDLYKCEPWDLPdKsYLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATG 93 
                           79****************************.99**************95335666888******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd++v+s +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  HL.SW.v1.0.G020941.1  94 KDRAVHS-QRRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                           *******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-643158IPR003441NAC domain
PROSITE profilePS5100560.8996158IPR003441NAC domain
PfamPF023656.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKITG QTIELEIIPE VDLYKCEPWD LPDKSYLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVHS QRRPVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLVDDSLGG TVSSTLKDSY ALCRVFKKTI QIPKCNKEEK PDNNSSTTTT  180
NGRTTEKESA AIVINESNIT VDHHISRRVE NEDEYYPNNN KFLSETSSSD LTQGTPTENG  240
VLDDFQAPFA SDNEANSAAD LYSLGVNCSN LVQEMQMPSY ESLYQLAYPP LELDDFPQIN  300
LEEMKLMKSE TTEECMSYEK FRDYMNGTVE EIFSICSSSS HHEENSANAL SMQQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-59115812165NO APICAL MERISTEM PROTEIN
1ut4_B9e-59115812165NO APICAL MERISTEM PROTEIN
1ut7_A9e-59115812165NO APICAL MERISTEM PROTEIN
1ut7_B9e-59115812165NO APICAL MERISTEM PROTEIN
4dul_A9e-59115812165NAC domain-containing protein 19
4dul_B9e-59115812165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092473.10.0NAC domain-containing protein 86
TrEMBLA0A2P5CMM20.0A0A2P5CMM2_TREOI; NAC domain containing protein
STRINGXP_010092473.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-108NAC domain containing protein 20