PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020849.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 381aa    MW: 42859.5 Da    PI: 4.9527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020849.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM446.8e-141711610127
                   NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                           td+e+    L+k ++g + ++ +vi++v+ +++ P++Lp      e+ w++ +++ +k          ++ gyW++ g+  +++s +++
  HL.SW.v1.0.G020849.1  17 TDKEIF-MCLEKMMNGFPPPC-NVISDVNPFEHMPENLP------ERIWFYIMSKVEKD---------ASFGYWRTEGEACKIFS-NSS 87 
                           788888.66999999999999.99**************9......35576666665544.........467**************.999 PP

                   NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                            +  k+tL f++g+ap+g kt+W m  y 
  HL.SW.v1.0.G020849.1  88 ITAWKNTLEFFEGQAPHGYKTNWKMLKYW 116
                           9************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4368139IPR003441NAC domain
SuperFamilySSF1019415.89E-1917138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MCPPATSPSH DIGIFCTDKE IFMCLEKMMN GFPPPCNVIS DVNPFEHMPE NLPERIWFYI  60
MSKVEKDASF GYWRTEGEAC KIFSNSSITA WKNTLEFFEG QAPHGYKTNW KMLKYWITWN  120
VLSKDNNVKE SLLCNVFFVD EQKSYHGMPK KMARADMASQ STQPYVQRSE NCTGQSPANK  180
PQTSEDNEIG NRESVPAILV DIVPDIDYLS GGDFLELADL QIPLSPSSSS DSICVSMSSG  240
ECFNALDLLA DIESEKPLDL VQNNAGSKLS VFVSSTPTKM VMHPAWTGTC KSHSEELNDK  300
SMTGSAISRK IPDEKVLKNP IENQKPELKI EGTSSTCRNR HESLGGNKAE EEEEEEEEDK  360
REAHGRKKKL RKKYLCFMPF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027738.11e-133NAC domain-containing protein 7
RefseqXP_024027739.11e-133NAC domain-containing protein 7
TrEMBLA0A2P5AIV11e-159A0A2P5AIV1_PARAD; NAC domain containing protein
STRINGXP_010106034.11e-121(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-11NAC domain containing protein 28