PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020812.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 542aa    MW: 60389.2 Da    PI: 8.2052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020812.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.6e-33192249260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK+vkgse+prsYY+Ctsa+C +kkkvers  d++++ei+Y+g+Hnh+k
  HL.SW.v1.0.G020812.1 192 EDGYNWRKYGQKQVKGSENPRSYYKCTSANCLMKKKVERSL-DGQITEIVYRGNHNHPK 249
                           7****************************************.***************85 PP
2WRKY107.47.2e-34357415159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Cts++Cpv+k+ver+++d+++v++tYeg+Hnh+
  HL.SW.v1.0.G020812.1 357 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPNCPVRKHVERASHDTRAVITTYEGKHNHD 415
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.306186250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-27186250IPR003657WRKY domain
SuperFamilySSF1182901.22E-24188250IPR003657WRKY domain
SMARTSM007744.7E-36191249IPR003657WRKY domain
PfamPF031065.8E-25192248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-38342417IPR003657WRKY domain
SuperFamilySSF1182901.15E-29349417IPR003657WRKY domain
PROSITE profilePS5081138.056352417IPR003657WRKY domain
SMARTSM007741.2E-39357416IPR003657WRKY domain
PfamPF031068.0E-26358415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDTNNNIGQE NSSLTWGLSD QNGNDFPRFK TLQPSSLPPP NPLSPSSYLA TTSGFSPTGF  60
LNSPMFLSSS NALPSPTTGA FAGQTFDWRS NSKDKQQQME EEEKFFSDFS FQPRTGPVSM  120
EKSMERPPQQ PHEQAWQFDF NKSTKQSTFP IEKKEVKTEY PSSKPIFVPS EMNIPQTHYA  180
QPSQYVREQK SEDGYNWRKY GQKQVKGSEN PRSYYKCTSA NCLMKKKVER SLDGQITEIV  240
YRGNHNHPKP QSTRRSSSHA INHQTTSYPT NSGAVSDHSG TFSNAAVHED CSSDSIGEEG  300
FDRNSPTFNS VGDNDDNEPE AKRLKGENAN EVFSASGNRT VKEPRVVVQT TSEIDILDDG  360
YRWRKYGQKV VKGNPNPRSY YKCTSPNCPV RKHVERASHD TRAVITTYEG KHNHDVPAAR  420
GSSSYAMNRP APNNNSSNDV VTTLPHRPLP LANNNTTNHS NYSTSLLNAR LPNSVVNQPP  480
YTLQMLQHGS GSLGLSGGFG KPAAGVYASR SEPQDLFFQS KEERNIKEQK DDTAFFESFL  540
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-38192418878Probable WRKY transcription factor 4
2lex_A9e-38192418878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093567.20.0probable WRKY transcription factor 33 isoform X2
SwissprotQ6B6R41e-116WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2P5BXQ90.0A0A2P5BXQ9_PARAD; WRKY domain containing protein
STRINGXP_010093567.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-102WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]