PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020668.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 467aa    MW: 51711.4 Da    PI: 6.4173
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020668.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1053.9e-33249307159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK vk+s++prsYYrCt++gC vkk+vers+++p++v++tYeg+H+h+
  HL.SW.v1.0.G020668.1 249 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTPGCGVKKRVERSSDNPTIVVTTYEGQHTHP 307
                           59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-35234309IPR003657WRKY domain
SuperFamilySSF1182901.83E-29241309IPR003657WRKY domain
PROSITE profilePS5081132.466244309IPR003657WRKY domain
SMARTSM007746.1E-40249308IPR003657WRKY domain
PfamPF031065.4E-27250307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDKKEEELIK KENSSIIMAN SATTPTPTPF TNNNNNAFFS SEEYHFFGST NISSLFDNNY  60
HYYFNNNNNI IMPPVSSSCI TEDHHQHQQQ QASSLGFMDL LGINQDFGSS LFYLPPPPED  120
HSNDDMLILN NIDNDMGLSS PPPQPPPPPP IPSSSPASST VLPETSEVLN STTPTTPNSS  180
TLSSSSNEER QQKVPVIPDQ ETEAEAEAET EQDPEKTQNN KQLKPKKKNQ KRQREPRFAF  240
MTKSEVDHLD DGYRWRKYGQ KAVKNSPYPR SYYRCTTPGC GVKKRVERSS DNPTIVVTTY  300
EGQHTHPCPV TPRGSLGISP ASADSGAFFS AAGSHYGGAA AMPMLPSHQH QFQYRQSSNP  360
YLYSSSSTPY SSSINMISRS NNSTITTANH ISNTPSFVDQ EKHNNSNNNN NNDYINSNNE  420
VVGVTTTTKS SSSPSTANLV MRNHGGLLQD IVPTRMRSED HHHQRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-282423091077Probable WRKY transcription factor 4
2lex_A3e-282423091077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867169.15e-79probable WRKY transcription factor 48
RefseqXP_015883203.15e-79probable WRKY transcription factor 48
SwissprotO229001e-50WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2P5CV542e-92A0A2P5CV54_PARAD; WRKY domain containing protein
STRINGXP_009372109.12e-76(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-47WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]