PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 232aa MW: 26897.1 Da PI: 8.2179

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G020531.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	68	122	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k++t+t++qle Le+ F++ ++ e++ +L+++lgL+ rq+ vWFqNrRa++k HL.SW.v1.0.G020531.1 68 KKKRTLTNNQLESLERSFQEGIKLEPERKMKLSRELGLESRQIAVWFQNRRARWK 122 67789*************************************************9 PP
2	HD-ZIP_I/II	111.5	5.5e-36	68	158	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kkr l+++q+++LE+sF+e kLeperK++l+reLgl+ rq+avWFqnrRAR+k++q+E+ yeaLk+ yd++++e+++L++ev++L++ HL.SW.v1.0.G020531.1 68 KKKRTLTNNQLESLERSFQEGIKLEPERKMKLSRELGLESRQIAVWFQNRRARWKARQMERSYEALKHDYDHISKEKQMLQEEVRKLKR 156 599************************************************************************************97 PP HD-ZIP_I/II 90 el 91 + HL.SW.v1.0.G020531.1 157 FI 158 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-19	51	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-20	53	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	64	124	IPR001356	Homeobox domain
SMART	SM00389	3.2E-16	67	128	IPR001356	Homeobox domain
Pfam	PF00046	7.8E-17	68	122	IPR001356	Homeobox domain
CDD	cd00086	1.01E-14	68	125	No hit	No description
PRINTS	PR00031	4.7E-5	95	104	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	99	122	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.7E-5	104	120	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.0E-8	126	155	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDWNGNARHS VSRTECSYGF PFHNDYESYC HGMEMKHQPI LSDTAQGLNI GPSMERDSPS 60 SYGCSQEKKK RTLTNNQLES LERSFQEGIK LEPERKMKLS RELGLESRQI AVWFQNRRAR 120 WKARQMERSY EALKHDYDHI SKEKQMLQEE VRKLKRFIRD NAVGSKQVAM MISGNTNCMI 180 SGEDMAETTS DAINIIRSNK SQGTNHHQCN PFFNAEEYNN PISPPYWGFF P*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021810960.1	5e-86	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	2e-41	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2P5FVQ0	4e-81	A0A2P5FVQ0_TREOI; Octamer-binding transcription factor
STRING	XP_008241330.1	9e-85	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	8e-44	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]