PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020496.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 727aa    MW: 79986.7 Da    PI: 5.5365
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020496.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.73.1e-2874158187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+ aL+++r+em+ ++r++  k+plW++vs+k++e g++rs+k+Ckek+en+ k++k++k+g+ +++  + +t+++fdqlea
  HL.SW.v1.0.G020496.1  74 RWPRQETIALLKIRSEMDVAFRDATVKGPLWDDVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGKS--DGKTYRFFDQLEA 158
                           8********************************************************************964..5557*******85 PP
2trihelix108.44.8e-34531616187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k evlaLi++r++++ +++++  k+plWee+s+ mr++g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  HL.SW.v1.0.G020496.1 531 RWPKAEVLALIKLRTNLDAKYQENGPKGPLWEEISALMRKHGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 616
                           8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001271133IPR001005SANT/Myb domain
CDDcd122031.70E-2373138No hitNo description
PROSITE profilePS500906.85373131IPR017877Myb-like domain
PfamPF138371.4E-1873159No hitNo description
SMARTSM007170.0014528590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-4530587IPR009057Homeodomain-like
CDDcd122032.66E-29530595No hitNo description
PROSITE profilePS500907.131530588IPR017877Myb-like domain
PfamPF138379.2E-23530617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MLGDSSGAPT GLGSSSGGGD AAVAAVSQEG GGRGGSNNSG EEGRIMMMSS SNNSKNHEEM  60
LMSSGTDRSF GGNRWPRQET IALLKIRSEM DVAFRDATVK GPLWDDVSRK LAELGYHRSA  120
KKCKEKFENV YKYHKRTKDG RTGKSDGKTY RFFDQLEALE HQLSSFSSSS SPTSAVPTRP  180
QLPKPQPPTM QTAAAASMMM ATTPISAAAN NTTTTTPMAP LPQNTTTTAT TTVPSISPSA  240
VVTTMPMMNI SFQSPFQGVS TNPTTILPLP ATNPTTTATA DAATTTTFPS SEFRSISADL  300
VSNSMTTSST SSDEEMEDVE TGGGGGGGGG GRRKRKRKWK DFFERLMKEV IQRQEELQKK  360
FLEAIEKREQ ERMVREEAWR MQEMSRINRE REILAQERSY AAAKDAAVMS FLQKVSEQQS  420
QQNPGGAAPT ADILPPLPII QPVQSTQPPQ AQPQTSPQPQ PQPQQQPQPQ PPQPLPSPPP  480
LMQRPQPVVS SIENVPKSDH LNENNNNNNI IVSNSNNNNS SMADGSGSSS RWPKAEVLAL  540
IKLRTNLDAK YQENGPKGPL WEEISALMRK HGYNRNAKRC KEKWENINKY FKKVKESNKK  600
RPEDSKTCPY FHQLDALYRQ KTSKYYDSSA AALQVGQQQH LAKPENSVPL MVQPEQQWPP  660
APLPSTGNNQ NTSTEEMERL DRINHEEEDY EEDEEDEDDD EEDEDEGGNN YELVANKPGT  720
TVNAVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336RRKRKR
2331337RRKRKRK
3332337RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592114.10.0trihelix transcription factor GT-2
TrEMBLA0A2P5DSF60.0A0A2P5DSF6_PARAD; TFIIB transcription factor
STRINGAES623650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-59Trihelix family protein