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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G020466.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 242aa MW: 27919 Da PI: 8.4277 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G020466.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 150.7 | 7.1e-47 | 18 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87
lppGfrF+Ptdeelv +yL+ kv + + +++++e+++++++PwdLp++ e++ yfFs+++ ky++g+r+nr t+sgyWkatg
HL.SW.v1.0.G020466.1 18 LPPGFRFQPTDEELVFQYLRCKVFSCPlpPYSSDIVPEINLCNYDPWDLPSS-GDLEQDRYFFSNKEAKYKNGNRSNRRTSSGYWKATG 105
79***********************9965334578***************43.4456789***************************** PP
NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+dk+++s+ ++ vg++ktLvfykg+ p+g +tdW+mhey+l
HL.SW.v1.0.G020466.1 106 SDKKIVSStMKHIVGTRKTLVFYKGKPPHGARTDWFMHEYTL 147
******9866778***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MNNNKYNFVR NNNGVIKLPP GFRFQPTDEE LVFQYLRCKV FSCPLPPYSS DIVPEINLCN 60 YDPWDLPSSG DLEQDRYFFS NKEAKYKNGN RSNRRTSSGY WKATGSDKKI VSSTMKHIVG 120 TRKTLVFYKG KPPHGARTDW FMHEYTLTFD PQQITQNQTE LNWVLCRIFY KDRSTKKDVE 180 DDHHEGTSVQ NWRENNYEPK MFDLVMGCNV NYNNMGPVSS SSSSSSSSSF TDVTSSNATY 240 Y*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 9e-43 | 16 | 177 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-43 | 16 | 177 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-43 | 16 | 177 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-43 | 16 | 177 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-42 | 16 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-42 | 16 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-42 | 16 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-42 | 16 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-42 | 16 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-42 | 16 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-42 | 16 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-42 | 16 | 177 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-43 | 16 | 177 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-43 | 16 | 177 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |