PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019571.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 505aa    MW: 55991.6 Da    PI: 4.8392
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019571.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.3e-10438494148
                           TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                           r+ WT+eE+e l d+v+++         Wk+I ++        Rt+ ++k++w++++
  HL.SW.v1.0.G019571.1 438 RLHWTAEEEEMLRDGVHKFSITrnivlPWKKILEYGRhvfdPSRTPVDLKDKWRNLM 494
                           789*****************99*************99******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.105.9E-693162IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.97E-7105161IPR011011Zinc finger, FYVE/PHD-type
CDDcd154890.00233110155No hitNo description
PROSITE patternPS013590111155IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.7E-10432496IPR009057Homeodomain-like
PROSITE profilePS500908.432433494IPR017877Myb-like domain
SuperFamilySSF466897.03E-11436494IPR009057Homeodomain-like
SMARTSM007178.5E-5437496IPR001005SANT/Myb domain
PfamPF002491.4E-6439493IPR001005SANT/Myb domain
CDDcd116605.56E-13441494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MEVGFGHCRR RLVVLPGFLF VGLGLGLSLF SSIRLTLKNP LSNQKNGNEK SESTCVIFVS  60
DSEGDDDNNE GMNPESTPQT VKNGGGMTPQ MTSSCSEDSM ELDSLEEGET CFRCKGRDKR  120
VMVCSEIGCL IAVHDECMGF EPTFDDLGLF YCPYCKHRRA KAVALETSSR VMAAKKALLN  180
FLEGKVVGED KEKEKDCDDA DDRNEGDTLP SARDGICCNN KNVPIPNDHE VLSQVADEKE  240
MDDAQVGCHG RDTVVIAKEV QPSTNVVNGG DNVGCGEGTA AGIDPLQGSS TKEASNKDGE  300
YGKEEDSGPM DNGKNERIDE GNEEREILDT SEVVEEDEEQ IQTESSDGLE NTDDISETES  360
LVNRHRRFKQ RAGKTVRSET VTLPKRSSPR LRKAVARQKS TTKKNALPFI EKNTISEKSQ  420
QPLKLVPMMD FSNAKRRRLH WTAEEEEMLR DGVHKFSITR NIVLPWKKIL EYGRHVFDPS  480
RTPVDLKDKW RNLMAKEGAS IDKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434438KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5A7N91e-160A0A2P5A7N9_PARAD; Octamer-binding transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-07MYB_related family protein