|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
HL.SW.v1.0.G019549.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
Family |
NAC |
Protein Properties |
Length: 375aa MW: 42725.5 Da PI: 6.9517 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G019549.1 | genome | HOPBASE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 174.4 | 3.3e-54 | 7 | 132 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86
+ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkat
HL.SW.v1.0.G019549.1 7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQElcKIGSeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKAT 94
69****************************.9***************954555552555****************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
g+dk++++ +++l+g++ktLvfykgrap+g+k+dW+mhe
HL.SW.v1.0.G019549.1 95 GRDKAIYA-RQSLIGMRKTLVFYKGRAPNGQKSDWIMHE 132
********.999**************************9 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DVDLYKIEPW DLQELCKIGS 60 EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YARQSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEVFKKRMAT VRKAGDYDSP PCWYDDQVSF MQTELESPMR SVSHHHHHHH 180 GPGAFASSYH QNHYPNCKQE LELHQFSMPA AAVVADPFFQ LPQLESPKLP FSGSTSTTTT 240 TAEDHRHHHQ SHHHNHHINH QNSSSLMIMS NGSLFSNEHA VDQFAPNATT DWRVLDKFVA 300 SQLSHDEQVI TAAAAGSGAG VPLFHVTHQH VINNLLGGDD DDHEQQLLEL KSSEMAHDYV 360 STSTSTSCQT DLWK*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |