PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G019287.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 271aa MW: 31078.9 Da PI: 5.1658

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G019287.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.5e-20	43	95	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe++ ++ +++ +LA++lgL+ rqV +WFqNrRa++k HL.SW.v1.0.G019287.1 43 QRRFSDEQIKLLESMFESETKLEPRKKIQLARELGLQPRQVAIWFQNRRARWK 95 568*************************************************9 PP
2	HD-ZIP_I/II	123.2	1.3e-39	42	133	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ++rr+s+eq+klLE++Fe+e+kLep++K +lareLglqprqva+WFqnrRAR+k+kq+E+d++ L+++yd+l+++ e+L++e+e+L+ + HL.SW.v1.0.G019287.1 42 NQRRFSDEQIKLLESMFESETKLEPRKKIQLARELGLQPRQVAIWFQNRRARWKSKQIEQDFKNLRAQYDSLVSQFESLKEEKESLALQ 130 589***********************************************************************************999 PP HD-ZIP_I/II 91 lke 93 l++ HL.SW.v1.0.G019287.1 131 LQK 133 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	6.8E-16	32	101	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.04E-18	35	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.621	37	97	IPR001356	Homeobox domain
CDD	cd00086	7.87E-16	43	98	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-20	44	103	IPR009057	Homeodomain-like
Pfam	PF00046	3.9E-17	44	95	IPR001356	Homeobox domain
PRINTS	PR00031	8.1E-6	68	77	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	72	95	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.1E-6	77	93	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.7E-12	97	138	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MESGEFPSSE NYFQSITSLE QPPSPPSVAK KKKKNKNNNN YNQRRFSDEQ IKLLESMFES 60 ETKLEPRKKI QLARELGLQP RQVAIWFQNR RARWKSKQIE QDFKNLRAQY DSLVSQFESL 120 KEEKESLALQ LQKLKDLLLS KPNDEIKEDK DFEEEKYRNT NSKGETKTSL EEELEDRGGG 180 VLMTTTTTNN IENLGQQGYE LLSTNQQQVD SSLTSLEMAK FLELARELEL GDIYLLLTAS 240 NNAAAIVLLP IKFHNFKANP DSQSFTCVLA *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	34	AKKKKKN
2	89	97	RRARWKSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015878685.1	3e-61	homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A2P5E6N4	1e-78	A0A2P5E6N4_TREOI; Aldo/keto reductase
STRING	EMJ19568	2e-57	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	5e-35	homeobox 7