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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
HL.SW.v1.0.G019075.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
C2H2 |
| Protein Properties |
Length: 398aa MW: 45153.9 Da PI: 7.1797 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G019075.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.6 | 9.5e-05 | 230 | 249 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
HL.SW.v1.0.G019075.1 230 FSCPLCFKTFNRYNNMQMHM 249
89*****************9 PP
|
| 2 | zf-C2H2 | 14.3 | 0.00012 | 314 | 336 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk F + + ++H +++
HL.SW.v1.0.G019075.1 314 FMCRKCGKAFAVRGDWRTHEKNC 336
89*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MSRDPYSNYL NGWLNLNQIH HHHNPHHHHL HLLHHNNPYN FPSPYHDYLT NTSNYSNNTT 60
NICLFNIQNN NNTSLSSSPP SPPLKEALPL LSLSPTRSPP HDLDLDLDHD HDKEEEKKKK 120
KKLEENSFLL STSNNTTFDN NETVTVALHL GLPNPITSTA TATCSADLIS RLSSTEISDN 180
KDRDEDQDQE QEQDHVSSSS GYHSNRSSVL NKGQYWIPTP AQILIGPTQF SCPLCFKTFN 240
RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLRLPCFCCA PGCRNNIDHP RSRPLKDFRT 300
LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCTCGSDFKH KRSLKDHIKA 360
FGNGHAAYGV DCFDQDDDGD GDEAEGASEV STEQDNT*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 115 | 122 | EKKKKKKL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
