PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019050.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 452aa    MW: 49887.2 Da    PI: 7.0812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019050.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-175599147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qky
  HL.SW.v1.0.G019050.1 55 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKY 99
                          789*******************.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1649102IPR009057Homeodomain-like
PROSITE profilePS5129422.29750104IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-1052104IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-1753102IPR006447Myb domain, plants
SMARTSM007171.0E-1354102IPR001005SANT/Myb domain
PfamPF002491.6E-155599IPR001005SANT/Myb domain
CDDcd001671.12E-1157100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAVEEQSEGM LSNNSGFAGN CIINGDANYK SESPLKDLYE SAPKVRKPYT ITKQREKWTE  60
EEHQKFLEAL KLYGRGWRQI EEHVGTKTAV QIRSHAQKYF SKVVRGSTAS VEACMKPIEI  120
PPPRPKRKPM HPYPRKSVDS FNGTSVLNQL ERSPSPNFAA TDKGTKSPTS VLSSHGSDAV  180
GYDASDHHHN RSPSSTSCTT DMQSISLSPS DKENCYLMSS SSADEKISLQ GNQLSAQSNV  240
ENFSVKIEPG CKDTARNNKE AKSSTSTSFK LFGRTVLLPG FEKESPSGTE DSETLKTDEG  300
QELDINLSLG GFVSPLESFP PINQTEQQKE SSNIVDAGAQ MLWWSMPQVP IHYQAAYNPS  360
RDQTPPKMEE KEIKKERSCS DSNEGSSSGV ETGGDRNIEA VNSFSQEPHS KGSVEQCNSR  420
KGFVPYKRCL ADRDNASTAT SDRERRKIRV H*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023521.11e-173protein REVEILLE 7 isoform X1
TrEMBLA0A2P5CQF60.0A0A2P5CQF6_TREOI; GAMYB transcription factor
STRINGXP_010099677.11e-172(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-52MYB_related family protein