PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018979.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 333aa    MW: 38224.1 Da    PI: 7.1822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018979.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-14228317190
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHH.HHHT--TT-EEEEEE-SS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFv.kangLkegDfvvFkldgr 87 
                           f+ vlt+ d++ s+++ +p kfae++ + +  sk+ltl+   + ++W  kl    +++r+ +++GW +F  + ++LkegD++vF+++++
  HL.SW.v1.0.G018979.1 228 FLVVLTQYDMTISSCVEVPLKFAEDNLNRNLDSKDLTLQAhNEEEKWPAKL--GYYRNRVKIGQGWGQFLaNNKDLKEGDVCVFEMIKE 314
                           778899999999999***********666678999***996777*******..88888999********715678**********9975 PP

                           SEE CS
                    B3  88 sef 90 
                           +++
  HL.SW.v1.0.G018979.1 315 EGE 317
                           443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-61880IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-61880IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-16224329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-14224328IPR015300DNA-binding pseudobarrel domain
CDDcd100176.30E-18226329No hitNo description
PROSITE profilePS508639.897228326IPR003340B3 DNA binding domain
SMARTSM010197.8E-7228325IPR003340B3 DNA binding domain
PfamPF023622.2E-12228316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
METRYSDRSP ARPPTPPPPP PLFIVTVDEN SNFLHMMRIP TMFGIKYGDQ LSEEATLSVP  60
DDDRKWKVKV KKEGGKFWLR DVRICSMGSE IEYPCHLDKH DKEKNDSNDD DDDDIQFWGV  120
NLHRYVNGQA EKTSIGKKDD KTPRKRGMPR KEKKGTSAVA GPNNRASAER KKQRESLDKS  180
QSHEEDDVQR ALYYSNSKRT VKHSKETEKA IDAASTMITY ELIKNPAFLV VLTQYDMTIS  240
SCVEVPLKFA EDNLNRNLDS KDLTLQAHNE EEKWPAKLGY YRNRVKIGQG WGQFLANNKD  300
LKEGDVCVFE MIKEEGEVNE ILFKVWIYKA VS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-16B3 family protein