PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G018849.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HB-other

Protein Properties

Length: 1754aa MW: 196922 Da PI: 5.1807

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G018849.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	21	77	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k+kk HL.SW.v1.0.G018849.1 21 KTKRKMKTASQLEILEKTYAAEAYPSESLRAELSVKLGLSDRQLQMWFCHRRLKDKK 77 6799***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-18	5	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.78E-15	15	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	18	78	IPR001356	Homeobox domain
SMART	SM00389	1.4E-16	20	82	IPR001356	Homeobox domain
Pfam	PF00046	6.6E-16	21	77	IPR001356	Homeobox domain
CDD	cd00086	4.46E-13	21	77	No hit	No description
SMART	SM00571	3.5E-22	512	571	IPR018501	DDT domain
PROSITE profile	PS50827	17.189	512	571	IPR018501	DDT domain
Pfam	PF02791	9.1E-18	514	568	IPR018501	DDT domain
Pfam	PF05066	2.4E-15	694	762	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	9.5E-9	911	949	IPR028942	WHIM1 domain
Pfam	PF15613	2.5E-12	1094	1165	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1754 aa Download sequence Send to blast
MEVSGSEGGE KKKPPEGGEN KTKRKMKTAS QLEILEKTYA AEAYPSESLR AELSVKLGLS 60 DRQLQMWFCH RRLKDKKATP VKRLRGQDSS PARRGGEEMA VGDLGNEHAS GSGSRHSPFG 120 HVAEPRRGAP RHRVGGSRTG GGEMPVMAMR YYESQQTIAE LRAIAFVEAQ LGEPLREDGP 180 ILGMDFDTLP PDAFGAPIAT VGQKQSRRPY DAKVYERSDV KSIKGTGRAL LEYQFIPEKP 240 TVKTEAYERL APSYHYGSPA EGPSTRTSLL SAGHPYAPSN EHLSSGYGFQ DAYFGTHPIS 300 QLENPYIASE RRATIEEDAL RNDRRRKSEE ARVAREVEAH ERRIRKELEK QDILRRKREE 360 QTRKELERQD RERRKEEERL LREKQREEER YQREQRRELE RREKFLQKES LRAEKMKQRE 420 ELRREREAAR LKAANERAMA RKIAKESMEL IDDERLELME LAASCKGLPS IVSLDYETLQ 480 NLELYKDMRI AFPPKSVHLK KPFAVQPWTD SEDNIGNLLM VWRFLITFAD VLGLWPFTLD 540 EFVQAFHDYD PRLLSEIHVS LLKSIIKDIE DVARTPSTGL GANQTTAAHP VGGHPLIVEG 600 AYAWGFDIRS WQNHLNPLTW PEILRQFALS AGFGPQLKKR NAESSYHRDN YEGNDGADIV 660 SNLRSGAAVE NAFAKMQERG FSNPRKSRHR LTPGTVKFAA FHVLSLEGDK GLTILEVADR 720 IQKSGLRDLT TSKTPEASIA AALSRDTKLF ERTAPSTYCV RAAYRKDPAD AEAILSSARE 780 RIRVFKNGFL DGEDADEGER DEDSESDGGE DPEIDDLGTE INPEKEALVS QEVNKLNEVS 840 VSGNGEEIVQ VIETPKKDLQ NSCGDSVHSE SCVKMEDGTS FLTQPVNVVA SNNDVPNFGG 900 EDPDIDESNP GEPWVQGLVE GEYSDLSVEE RLNALVALVG VAIEGNSVRL VLEERLEAAN 960 ALKKQMWAEV QLDKRRIKED YVLRMPYTSF IGNKFELNSA ISSAEAKQSP LVNVDDKNNE 1020 TTGVLAVREE QMGDPSNNKP CVSSFLSEGN LQMQEVCAGP DNNLFQQPGY AADRSRSQLK 1080 SYIGHKAEEM YVYRLLPLGQ DRTRNRYWQF ITSASQNDPG CSRIFVELHD GRWRLIDSEE 1140 GFDALLASLD VRGVRESQLH AMLLRIELFF KKAVRKKMLH ANMGRQSEDT AKTAAVPTDC 1200 SNGFDSPSST LCLAESDLSE SSTSFVIELG RNKNEKNGAF QRYQDLERWI WKECLSSSAL 1260 YAIKHGKKRC KQLLDVCDAC HGVYSSENNH CPSCHRTFIS SESGTSFSEH VTRCEDKLNL 1320 DQYCTLNGSP SFPLRIRLLK VVLALIEVSV PPEALQSLWT DSHRKSWSTK LNASSSAEDL 1380 LQVHTLLESA IKREHLFSEF ETTYELLDSL NPRRCVAPNS TCFETITVLP WVPLTTAAVA 1440 LRIMEFDAAI FYIMQQKLDS QKDRGSGNVI KLSAKYAFMQ NPLDDGITRT PCQADNLKKD 1500 SWVDLGVGLE NSGHKKGSRG NGSGNGRGRG RSHVTTTRTR GGRSQKRATG SRGESAKRND 1560 RALGQELKLR WKGSQRGRGC KRGRRTVRSR QKPAKRMFGT GAGENIPEES IDEKFPRSLV 1620 QDWNTEDTTG LQLEDAEPAS SSSERSEYEE GNGQGSGDEF DEMGMDDYAT GFNDRAGDLD 1680 GSDYNGDEVD EDEDDNDEDD DQDEYDVRQD EQGDFNVDRF INGDSDEEEN REEGGQDMEI 1740 DQQTGSTSSD YSD*

Sequence ? help Back to Top

Protein Sequence Length: 1754 aa Download sequence Send to blast

MEVSGSEGGE KKKPPEGGEN KTKRKMKTAS QLEILEKTYA AEAYPSESLR AELSVKLGLS  60
DRQLQMWFCH RRLKDKKATP VKRLRGQDSS PARRGGEEMA VGDLGNEHAS GSGSRHSPFG  120
HVAEPRRGAP RHRVGGSRTG GGEMPVMAMR YYESQQTIAE LRAIAFVEAQ LGEPLREDGP  180
ILGMDFDTLP PDAFGAPIAT VGQKQSRRPY DAKVYERSDV KSIKGTGRAL LEYQFIPEKP  240
TVKTEAYERL APSYHYGSPA EGPSTRTSLL SAGHPYAPSN EHLSSGYGFQ DAYFGTHPIS  300
QLENPYIASE RRATIEEDAL RNDRRRKSEE ARVAREVEAH ERRIRKELEK QDILRRKREE  360
QTRKELERQD RERRKEEERL LREKQREEER YQREQRRELE RREKFLQKES LRAEKMKQRE  420
ELRREREAAR LKAANERAMA RKIAKESMEL IDDERLELME LAASCKGLPS IVSLDYETLQ  480
NLELYKDMRI AFPPKSVHLK KPFAVQPWTD SEDNIGNLLM VWRFLITFAD VLGLWPFTLD  540
EFVQAFHDYD PRLLSEIHVS LLKSIIKDIE DVARTPSTGL GANQTTAAHP VGGHPLIVEG  600
AYAWGFDIRS WQNHLNPLTW PEILRQFALS AGFGPQLKKR NAESSYHRDN YEGNDGADIV  660
SNLRSGAAVE NAFAKMQERG FSNPRKSRHR LTPGTVKFAA FHVLSLEGDK GLTILEVADR  720
IQKSGLRDLT TSKTPEASIA AALSRDTKLF ERTAPSTYCV RAAYRKDPAD AEAILSSARE  780
RIRVFKNGFL DGEDADEGER DEDSESDGGE DPEIDDLGTE INPEKEALVS QEVNKLNEVS  840
VSGNGEEIVQ VIETPKKDLQ NSCGDSVHSE SCVKMEDGTS FLTQPVNVVA SNNDVPNFGG  900
EDPDIDESNP GEPWVQGLVE GEYSDLSVEE RLNALVALVG VAIEGNSVRL VLEERLEAAN  960
ALKKQMWAEV QLDKRRIKED YVLRMPYTSF IGNKFELNSA ISSAEAKQSP LVNVDDKNNE  1020
TTGVLAVREE QMGDPSNNKP CVSSFLSEGN LQMQEVCAGP DNNLFQQPGY AADRSRSQLK  1080
SYIGHKAEEM YVYRLLPLGQ DRTRNRYWQF ITSASQNDPG CSRIFVELHD GRWRLIDSEE  1140
GFDALLASLD VRGVRESQLH AMLLRIELFF KKAVRKKMLH ANMGRQSEDT AKTAAVPTDC  1200
SNGFDSPSST LCLAESDLSE SSTSFVIELG RNKNEKNGAF QRYQDLERWI WKECLSSSAL  1260
YAIKHGKKRC KQLLDVCDAC HGVYSSENNH CPSCHRTFIS SESGTSFSEH VTRCEDKLNL  1320
DQYCTLNGSP SFPLRIRLLK VVLALIEVSV PPEALQSLWT DSHRKSWSTK LNASSSAEDL  1380
LQVHTLLESA IKREHLFSEF ETTYELLDSL NPRRCVAPNS TCFETITVLP WVPLTTAAVA  1440
LRIMEFDAAI FYIMQQKLDS QKDRGSGNVI KLSAKYAFMQ NPLDDGITRT PCQADNLKKD  1500
SWVDLGVGLE NSGHKKGSRG NGSGNGRGRG RSHVTTTRTR GGRSQKRATG SRGESAKRND  1560
RALGQELKLR WKGSQRGRGC KRGRRTVRSR QKPAKRMFGT GAGENIPEES IDEKFPRSLV  1620
QDWNTEDTTG LQLEDAEPAS SSSERSEYEE GNGQGSGDEF DEMGMDDYAT GFNDRAGDLD  1680
GSDYNGDEVD EDEDDNDEDD DQDEYDVRQD EQGDFNVDRF INGDSDEEEN REEGGQDMEI  1740
DQQTGSTSSD YSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	24	KKPPEGGENKTKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019794.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2P5FJ82	0.0	A0A2P5FJ82_TREOI; Octamer-binding transcription factor
STRING	XP_010093958.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator