PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018713.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 364aa    MW: 39656.2 Da    PI: 8.9739
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018713.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.82e-31139192458
           ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           +rY+eClkNhAas G h++DGCgEfmps geeg+a+alkCaAC+CHRnFHR+e +
  HL.SW.v1.0.G018713.1 139 TRYRECLKNHAASSGRHVLDGCGEFMPS-GEEGSADALKCAACDCHRNFHRKEID 192
                           69*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.9E-30139191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-21139193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-29140191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.153141190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.74E-20287360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-30288361IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-29299356IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEVRDEELDK EKGMRNTTTT TTTLDYNSPN RDSSPVGSEK LSHGNPIILN PSPHQTLAVF  60
PHNQYNLSYR PISKPRSRST RDHHHNQGSS PDPVTTVSPT STTPVASGSH LKTTATATAP  120
ASAAVEGGVV VVPVSSPPTR YRECLKNHAA SSGRHVLDGC GEFMPSGEEG SADALKCAAC  180
DCHRNFHRKE IDGGESQYVP GYKDINRRNS IVLPPQHYHH LHHQPHPHPH HHPFALHGLS  240
STPATGAGLI PPVMMAFGGG GGLAAESSSE DLNVFQSNYG GGGGIRGQQS SGAAGNSSKK  300
RFRTKFNQEQ KEKMMEFAEK LGWRIQKHDE QEVQVFCSDV GVKRQVFKVW MHNNKQAMKK  360
KEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-242983571675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889978.14e-93zinc-finger homeodomain protein 5
TrEMBLA0A2P5FXL01e-137A0A2P5FXL0_TREOI; Octamer-binding transcription factor
STRINGEOX910763e-88(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.17e-65homeobox protein 24