PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018554.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 658aa    MW: 72081.1 Da    PI: 7.2388
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018554.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-29347405259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ +d +++++tYeg+Hnh+
  HL.SW.v1.0.G018554.1 347 HDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCIDDMSILITTYEGTHNHP 405
                           7**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31331407IPR003657WRKY domain
SuperFamilySSF1182907.19E-27339407IPR003657WRKY domain
PROSITE profilePS5081128.323341407IPR003657WRKY domain
SMARTSM007748.7E-36346406IPR003657WRKY domain
PfamPF031063.0E-26348405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MRRYSVLTEN GKEIVKKGQT KAKENKRSSD KPSVDSTIKL QEHNMIISNI NGEEDDVTNK  60
GREGSFHVER DLNNLKSSSS SEKDLDIKQE HVAINADDHI TNDNPSLTET NNTDHSSSSV  120
LKNDQENGED GEDKLIKLTK AEMSDVKKEN ERLKLVLSRL LKDYQSLQTH FFEILRNQEA  180
KDKTNEDIKP LMKINDSITA ADHNNNHDQL SLSLGRTSSA STTTHTDREP RTNNEKKSSI  240
STSSKGNDDY REGLHSNSGK LALGLGTGST STDDHQMMKK STSSDDDILE DNKEEATTEP  300
TEMWPPSKVL IKTARSEGEE NDGVSQVSPL KKARVSVRAR CDTPTMHDGC QWRKYGQKIA  360
KGNPCPRAYY RCTVSPSCPV RKQVQRCIDD MSILITTYEG THNHPLPISA TAMASTTSAA  420
ASMLQSRSTT SSSNHLLPGG HNSNFLTTPS TTLFQTSNNN NNIRQPLPQQ FYFPNNTSFS  480
TSNSHPTVTL DLTVPNPSST SHMGPRYSST CLSFSTSSSN SSSVLPWNNI TNGYSNSNNN  540
GYLSNYSIMS HQNKLSNPSV GSHGTLVINN DGNHNKKVPF QEANNSTNNL YQSYMNNIVN  600
LSSTSNSTTA STLNHQQQPL TTETIAAATK AITSNPKFQS ALAAALSSFV GKGESGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19333407174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096349.11e-136probable WRKY transcription factor 72
TrEMBLW9RC211e-134W9RC21_9ROSA; Putative WRKY transcription factor 72
STRINGXP_010096349.11e-135(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-61WRKY DNA-binding protein 72