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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G018271.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family |
SRS |
| Protein Properties |
Length: 242aa MW: 25347 Da PI: 8.2107 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G018271.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 221.8 | 1.4e-68 | 22 | 165 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93
++sCqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa+krrerqqq++++ss + + ++++kr r+ +++ +ss++l+
HL.SW.v1.0.G018271.1 22 GVSCQDCGNQAKKDCVHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQQQQLSSLQHQ--PHQQPKRLRD---NNALMISSSRLQ- 104
579**********************************************999988655433..4444444444...455555555554. PP
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++++ +e+ ++P+evss+a+frcv+vss++d+++++aYqtav+igGhvfkGiLyd+G+e+
HL.SW.v1.0.G018271.1 105 TNTSSGMEVGNFPAEVSSQALFRCVKVSSMEDNDDQYAYQTAVNIGGHVFKGILYDHGPES 165
4556799****************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MMMRSSSSGG GGAGGGGVVG AGVSCQDCGN QAKKDCVHMR CRTCCKSRGY DCQTHVKSTW 60
VPASKRRERQ QQQQQLSSLQ HQPHQQPKRL RDNNALMISS SRLQTNTSSG MEVGNFPAEV 120
SSQALFRCVK VSSMEDNDDQ YAYQTAVNIG GHVFKGILYD HGPESNYNMG GETSSGGGGG 180
GGGGGNQVQP LDLITVAATA STAAGATEAS PSGAFDPSSL YQQPPLNTYI AGTQFFLPPR 240
S*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G66350.1 | 2e-63 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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