PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018182.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 538aa    MW: 59261.5 Da    PI: 4.6465
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018182.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.85.4e-2079532128
                   NAM  32 evikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118
                            +i+ev+i++++Pw+Lp k k+k++++ew+f s++  ++++++rk r+t++g Wk tgk k++ s     vg k  L+fy     kg k
  HL.SW.v1.0.G018182.1   7 PCIAEVNILDFDPWELPaKsKLKSNNNEWWFSSRSFYRTSSSDRKGRKTETGSWKITGKRKKIGS-----VGEKAYLTFY-----KGGK 85 
                           469*************95357788888***99999999999**********************98.....9*********.....6889 PP

                   NAM 119 tdWvmheyrl 128
                           tdW+m+ey++
  HL.SW.v1.0.G018182.1  86 TDWTMQEYSI 95 
                           ********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.6051116IPR003441NAC domain
SuperFamilySSF1019418.63E-226114IPR003441NAC domain
PfamPF023657.5E-83495IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDSEVDPCIA EVNILDFDPW ELPAKSKLKS NNNEWWFSSR SFYRTSSSDR KGRKTETGSW  60
KITGKRKKIG SVGEKAYLTF YKGGKTDWTM QEYSIPVHNN HLHQKYTNVI CCLRLKTDNK  120
GRKANKQKSA RVISHSKKKG RKANATCWEE GETSGDNITP DLENPVASAV TTLVHGHDEV  180
NHQQFSPMLL PGSTFIEHAL SLMLDYEMLV ASGENGEVSG KTTSDLVLEN PSASTDISPL  240
VQCDDEVSCQ LSSQIYSPDF SEKMLSSLLD NAIQAPSGID GELSGQIFSD FAHMLGNEKL  300
VPSGESGAIS GQTSSDIENQ LAHAVISPLL HCPDEASSQL FSPDSSFKGK TLSFISDNDM  360
HVPSGAYGEL SGISTSDLEN PLASAVVSSS VQCDDDASCQ LVSQIYSPDS SKQMLSSLLD  420
YKIQAPLGTD GELSGQSSSD FDNQVAFVAH CDDEMNRHLS WPMYSPDVSN EYYVKFADPF  480
VDDREENDNR TTTGLFSTYR TSSKRPYVYF DGQFMGEAHT EEVNERAKRC VYWPLDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1850024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04420.11e-16NAC domain containing protein 48