PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G018182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 538aa MW: 59261.5 Da PI: 4.6465 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.8 | 5.4e-20 | 7 | 95 | 32 | 128 |
NAM 32 evikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118 +i+ev+i++++Pw+Lp k k+k++++ew+f s++ ++++++rk r+t++g Wk tgk k++ s vg k L+fy kg k HL.SW.v1.0.G018182.1 7 PCIAEVNILDFDPWELPaKsKLKSNNNEWWFSSRSFYRTSSSDRKGRKTETGSWKITGKRKKIGS-----VGEKAYLTFY-----KGGK 85 469*************95357788888***99999999999**********************98.....9*********.....6889 PP NAM 119 tdWvmheyrl 128 tdW+m+ey++ HL.SW.v1.0.G018182.1 86 TDWTMQEYSI 95 ********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.605 | 1 | 116 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.63E-22 | 6 | 114 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-8 | 34 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MDSEVDPCIA EVNILDFDPW ELPAKSKLKS NNNEWWFSSR SFYRTSSSDR KGRKTETGSW 60 KITGKRKKIG SVGEKAYLTF YKGGKTDWTM QEYSIPVHNN HLHQKYTNVI CCLRLKTDNK 120 GRKANKQKSA RVISHSKKKG RKANATCWEE GETSGDNITP DLENPVASAV TTLVHGHDEV 180 NHQQFSPMLL PGSTFIEHAL SLMLDYEMLV ASGENGEVSG KTTSDLVLEN PSASTDISPL 240 VQCDDEVSCQ LSSQIYSPDF SEKMLSSLLD NAIQAPSGID GELSGQIFSD FAHMLGNEKL 300 VPSGESGAIS GQTSSDIENQ LAHAVISPLL HCPDEASSQL FSPDSSFKGK TLSFISDNDM 360 HVPSGAYGEL SGISTSDLEN PLASAVVSSS VQCDDDASCQ LVSQIYSPDS SKQMLSSLLD 420 YKIQAPLGTD GELSGQSSSD FDNQVAFVAH CDDEMNRHLS WPMYSPDVSN EYYVKFADPF 480 VDDREENDNR TTTGLFSTYR TSSKRPYVYF DGQFMGEAHT EEVNERAKRC VYWPLDG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18500 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04420.1 | 1e-16 | NAC domain containing protein 48 |