PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G018168.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26139.7 Da PI: 7.6624 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.4e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr+g+ KKAeELSvLCda+v +iifsstgkl+eyss HL.SW.v1.0.G018168.1 10 KIDNATARQVTFSKRRKGLVKKAEELSVLCDADVGLIIFSSTGKLFEYSS 59 69**********************************************96 PP | |||||||
2 | K-box | 51.3 | 4.9e-18 | 92 | 172 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++L kei++ + +R+l Ge+L+ L++++LqqLe+ Le +l+++ +kK e ++++i+elq+k k+l een++Lr++++ HL.SW.v1.0.G018168.1 92 SSYSRLCKEISEKSHRLRQLRGEELHGLNIEDLQQLEKSLEAGLNRVMEKKGEKIMKEINELQMKGKKLMEENERLRQEVA 172 5688999999999999**************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.969 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.95E-39 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 6.67E-31 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.105 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-15 | 93 | 171 | IPR002487 | Transcription factor, K-box |
Gene3D | G3DSA:1.20.5.370 | 7.3E-4 | 147 | 176 | IPR014751 | DNA repair protein XRCC4, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006302 | Biological Process | double-strand break repair | ||||
GO:0006310 | Biological Process | DNA recombination | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAREKIQIRK IDNATARQVT FSKRRKGLVK KAEELSVLCD ADVGLIIFSS TGKLFEYSST 60 SMKEIIDRHH LHSKNLEKLE QPSLKLQLVE NSSYSRLCKE ISEKSHRLRQ LRGEELHGLN 120 IEDLQQLEKS LEAGLNRVME KKGEKIMKEI NELQMKGKKL MEENERLRQE VADMSNGRAR 180 QVVGTDSEYV ITEEGHSSES VTNVYTSNGP PQDYDSTSDT SLKLGLPYGG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023906595.1 | 1e-126 | MADS-box protein JOINTLESS | ||||
Refseq | XP_023906601.1 | 1e-126 | MADS-box protein JOINTLESS | ||||
Refseq | XP_023906610.1 | 1e-126 | MADS-box protein JOINTLESS | ||||
Refseq | XP_023906617.1 | 1e-126 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 1e-108 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A2P5AQG7 | 1e-141 | A0A2P5AQG7_PARAD; MADS-box transcription factor | ||||
STRING | cassava4.1_015543m | 1e-125 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-102 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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