PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018149.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 323aa    MW: 35715.4 Da    PI: 7.2053
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018149.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.8e-30171230159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp+++++tYegeH h+
  HL.SW.v1.0.G018149.1 171 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApNCPVKKKVQRSAEDPSLLVVTYEGEHCHS 230
                           58***************************99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-29163231IPR003657WRKY domain
PROSITE profilePS5081125.212166232IPR003657WRKY domain
SuperFamilySSF1182902.09E-25168231IPR003657WRKY domain
SMARTSM007746.2E-35171231IPR003657WRKY domain
PfamPF031061.4E-24172229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESTWPKNSL DLNLNSFQHV IEVPEKELER DHSSNFGGKF SVKEEGTGDG DVDKNVLLTE  60
ELHRMSSENK KLTEMLSIVW KNYNNLQTKV RELMMTKNAE VSHGQNELAS LTPRKRKAGE  120
EYSNVVSGLI SNIMECCSSD EEYSCRLPKE IKSKVSTIFV QTDSSDKTLL VKDGYQWRKY  180
GQKVTRDNPS PRAYFKCSFA PNCPVKKKVQ RSAEDPSLLV VTYEGEHCHS HISSSQPSAL  240
MLPAISASMR SLASTVTFDL VRPAAAAGST DSPRMAPLQG IESPVLHQVL VQQMASSLTR  300
DPNFTAALAT AISGNLLDNT RV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-191702291371WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101038.11e-110probable WRKY transcription factor 40 isoform X1
RefseqXP_024024355.11e-111probable WRKY transcription factor 40 isoform X2
TrEMBLA0A2P5FN961e-147A0A2P5FN96_TREOI; WRKY domain containing protein
STRINGXP_010101038.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.14e-75WRKY DNA-binding protein 18