PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017992.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 282aa    MW: 31095.2 Da    PI: 8.5748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017992.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-1481127354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++++k+L
  HL.SW.v1.0.G017992.1  81 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 127
                           79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.42878127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1380132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.59E-1181130No hitNo description
Gene3DG3DSA:4.10.280.102.5E-1581130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1181127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.3E-4178226No hitNo description
CDDcd048732.28E-6179246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MENLYHQYSS PQPKGENFSQ YNMSSVHSND ESFLVPYWHL PPHDHHHVST SASPAFQFCG  60
FPSSFPNDGF GPEDKAAAAS KSHSQAEKRR RDRINAQLAT LRKLIPKSDK MDKAALLGSV  120
IDHVKDLKRK AGEVGKSSLV PTEVDEIIID SNLSDQDYVR LTEAGADKKS DNVNYIKASV  180
CCEDRPELFS ELIQVLKGLS LTAVRADVAS IGGRIKSVLI LSSKNNEEGS SSVCINTLKQ  240
SLKLVLSKIA SSSSMASTCR IRSKRQRCID HAMYWKILVE T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105437.11e-116transcription factor bHLH51
TrEMBLA0A2P5EM791e-157A0A2P5EM79_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010105437.11e-115(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-38bHLH family protein