PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017885.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 871aa    MW: 96310 Da    PI: 4.2862
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017885.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.86.2e-5191431127
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lp GfrF+Ptdeelv++yL+ k++g++ e+ evi+e+d++k+eP+dLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatg
  HL.SW.v1.0.G017885.1   9 LPLGFRFRPTDEELVNHYLRLKINGRHSEV-EVIPEIDVCKWEPSDLPglSVIKTDDPEWFFFCPRDRKYPNGQRSNRATSAGYWKATG 96 
                           699************************999.99***************6447888899******************************* PP

                   NAM  88 kdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127
                           kd+++ s+       ++ ++g+kktLvfy+grapkg++t+W+mheyr
  HL.SW.v1.0.G017885.1  97 KDRTIRSRsyrsasnTTGAIGMKKTLVFYRGRAPKGVRTHWIMHEYR 143
                           *******987766555555***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-588167IPR003441NAC domain
PROSITE profilePS5100555.849167IPR003441NAC domain
PfamPF023658.3E-2710143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MGEVSFGKLP LGFRFRPTDE ELVNHYLRLK INGRHSEVEV IPEIDVCKWE PSDLPGLSVI  60
KTDDPEWFFF CPRDRKYPNG QRSNRATSAG YWKATGKDRT IRSRSYRSAS NTTGAIGMKK  120
TLVFYRGRAP KGVRTHWIMH EYRPTLKDLD GTGPGQDAYV LCRLFRKTEE KSDAPKYDEV  180
DQTGLSPTTT KSSPDDTSSD LLQESATSDM AAGEESEVIN RWLTDKSDNM TPNAQAPVES  240
GSTSYLTSDV EDHVIDETPL EVPMLMEENS KFCELAHAQT DYTAFSSLPS QIEQPPYSPF  300
ASDFGNDDNV IPFMDGTDEQ DISLTELLDE VFHSRDESSS DKLNSLKNST VGKETHLYAQ  360
AQSLENIPSG TLYNGPYNNM GANMTQHDID TRASAWYNGQ MAAKDMLQMP ALFGPSQVEV  420
PPNDQGLMMG NLGAPGGNFV GQASLGGDYS MWNNLEESNS WNLPDNQYSH IGRTGIKIMP  480
RQPHRPSSGF NDTQGTAGRR LRLNINSSHE STANDDVCYG NKSHEEEEVQ SAATGVFKAE  540
QSHVNPNGDF SAGTGIKIRN RESQPQSSSN SFISQGDSSR RLRLQINTMP KSIASDNLKG  600
VDQNKESEEV QSNITEDTTE DAKGRERGEY GVNSTSTEDS QNVDYSEKED ELLSISSQDS  660
VDANNSETED ELDSISSEDF VEDVNNSEKE DELQSISAED SMDDANDSEK EVWSISTEDN  720
VEDANNSEIE DEVEPTSTET AEPATKQSPC LETGKESHHP LKFDSTKEIA IESFTEVEDK  780
SKEIIEVSST KEPNMEIFNR SSLTKLSFRA ETKDKMLGSS ATEASESLEK LPRHPAPTSS  840
FVISFGVSAV IVLLLASFGW RALDLGVAWK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-43917015171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026857.10.0protein NTM1-like 9 isoform X1
TrEMBLA0A2P5FIU10.0A0A2P5FIU1_TREOI; NAC domain containing protein
STRINGXP_010104895.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-106NAC 014