PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017572.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 352aa    MW: 39475.4 Da    PI: 6.6693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017572.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11200246455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++Er+RR+++N++f  L  ++P +     kK++  ++L  A++Y+k+L+
  HL.SW.v1.0.G017572.1 200 DHVIAERKRREKLNQKFIALSAVVPGL-----KKMDRTSVLGDAINYVKHLE 246
                           5999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.577196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17200262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.75E-11201250No hitNo description
PfamPF000101.0E-8201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16201264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEILSAKSLS DELEMNDALS NFMCDQYDMD CLDLIDLEDD GDHHHHEQQL NYFQSSSPDE  60
GNIHTPTICS NYQQNTTTKS SLPVDKERVK FKSSRNWNSR TSAAPIAKMV STTTTSSSAA  120
LISFNNSRSN STATATALVP SSEKNYYLEY WGSTTTATTS DQFYVPKQTQ NCTQKCNNKQ  180
GVRRVGSIST NTRSPLHARD HVIAERKRRE KLNQKFIALS AVVPGLKKMD RTSVLGDAIN  240
YVKHLEERVK TLEEQQEMKT ENHKPVILMK KSLLCTVEDS LSDNDMVMQP LPEIEARVSN  300
KDVLIRIYCE KQYGGCNLAN LLTKIENLHL TIVNTSALPL GSSTIDITIV AQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13200261870Transcription factor MYC2
5gnj_B3e-13200261870Transcription factor MYC2
5gnj_E3e-13200261870Transcription factor MYC2
5gnj_F3e-13200261870Transcription factor MYC2
5gnj_G3e-13200261870Transcription factor MYC2
5gnj_I3e-13200261870Transcription factor MYC2
5gnj_M3e-13200261870Transcription factor MYC2
5gnj_N3e-13200261870Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRE
2205210RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9T0721e-46BH025_ARATH; Transcription factor bHLH25
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-49bHLH family protein