PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017465.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 279aa    MW: 30850.8 Da    PI: 6.3533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017465.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT  Ed++l  +++ +G g+W+  +++ g++R++k+c++rw++yl
  HL.SW.v1.0.G017465.1 14 KGAWTVLEDKILTAYIEAHGEGQWRNLPKKAGLKRCGKSCRLRWLNYL 61
                          79********************************************97 PP
2Myb_DNA-binding51.81.8e-1667111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  HL.SW.v1.0.G017465.1  67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                           7899******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.098961IPR017930Myb domain
SuperFamilySSF466893.14E-2811108IPR009057Homeodomain-like
SMARTSM007172.9E-121363IPR001005SANT/Myb domain
PfamPF002497.8E-131461IPR001005SANT/Myb domain
CDDcd001679.94E-91661No hitNo description
PROSITE profilePS5129424.67862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2565117IPR009057Homeodomain-like
SMARTSM007174.3E-1466114IPR001005SANT/Myb domain
PfamPF002499.0E-1567111IPR001005SANT/Myb domain
CDDcd001671.08E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSPCCSKV GLNKGAWTVL EDKILTAYIE AHGEGQWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLCKKLNKET  120
KVKSSSYSGD DEEKATKKSN RVSSDSDAGG GGTTQVIRTR ASRCTRTVVI PTPTTTPLST  180
ATIAGPPPPL LLELDRDHHG HGDCSGVDDF GAVPMPYDDT VLMNNNWTTA VVDDCDPVNS  240
STVINNCLCE EKNDDDYGML FDFDLDSFLV ESCTEWLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884427.13e-85myb-related protein Zm38-like
TrEMBLA0A2P5B1975e-84A0A2P5B197_TREOI; GAMYB transcription factor
STRINGPOPTR_0006s23840.13e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-60myb domain protein 4