PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017392.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 421aa    MW: 46098.1 Da    PI: 6.9591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017392.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000592803181255
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  HL.SW.v1.0.G017392.1 280 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 318
                           6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.312268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.09E-6278322No hitNo description
SuperFamilySSF474596.54E-10278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-7282324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNRAGVLQQS SPVQQMMAAG NPNWWNYNTM RPPTQPVVLP SPSFLYPQFI PTNTATTTTT  60
TTTTTSNSSS SNSSANSSHL ELPNMPSWHD NNQDQLPESW SQLLLGGLVG EEEKAINMMN  120
HFQVKKLENW EDHDNQHNHH HHTHPHPHQM LSNTTQASNA SVVDVKQENT AAYVYGHGNQ  180
EYEPAKLGSP WLSPHHQHQL IMAASNSNSS PKSSCVTSFS SNMLDFSNIK PDHRTTTTTT  240
HPPPLLQDRS SECNSTATEG APLKKARVQP SSTQTTFKVR KEKLGDRITA LHQLVSPFGK  300
TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQQ SVHGERNCMF PEDPGQLLND  360
NCMKRKGAPD QQDSLEEPKK DLKSRGLCLV PVSCTLQVGS DNGADYWAPA LGGGGGGGFR  420
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100638.11e-179transcription factor bHLH68
SwissprotQ8S3D11e-101BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2P5BP320.0A0A2P5BP32_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRINGXP_010100638.11e-178(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]