PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 119aa MW: 13859.6 Da PI: 10.4755

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G017113.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.7e-19	28	83	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++R ++++eq++ L + Fe+++++ +e++ +LA++lg++ rqV vWFqNrRa+ k HL.SW.v1.0.G017113.1 28 RKRRLRLSEEQVNFLARNFESEQKLAQERKDRLASELGIDPRQVAVWFQNRRARLK 83 89****************************************************88 PP
2	HD-ZIP_I/II	104.4	9.2e-34	30	113	2	85
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +++rls+eqv++L ++Fe+e+kL +erK +la+eLg++prqvavWFqnrRAR k+k+lE++y++Lk+ +++++++++ Le+e + HL.SW.v1.0.G017113.1 30 RRLRLSEEQVNFLARNFESEQKLAQERKDRLASELGIDPRQVAVWFQNRRARLKAKKLEEEYSSLKKVHESVVHDQRGLESEFA 113 6789***************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.524	25	85	IPR001356	Homeobox domain
SMART	SM00389	6.1E-16	27	89	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.31E-17	28	93	IPR009057	Homeodomain-like
CDD	cd00086	1.02E-11	28	86	No hit	No description
Pfam	PF00046	1.4E-16	28	83	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.0E-19	30	93	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	56	65	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	60	83	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	65	81	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MSNTERETKE TLRGTKNKSA KEESVLARKR RLRLSEEQVN FLARNFESEQ KLAQERKDRL 60 ASELGIDPRQ VAVWFQNRRA RLKAKKLEEE YSSLKKVHES VVHDQRGLES EFASKENS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099829.1	2e-33	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	6e-29	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	W9RLH1	4e-32	W9RLH1_9ROSA; Homeobox-leucine zipper protein ATHB-40
STRING	XP_010099829.1	6e-33	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-22	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]