PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G016725.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 673aa MW: 78114.1 Da PI: 6.7303

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G016725.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.6e-24	58	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+Y+k+ GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++ +w++ ++eleHnH++ HL.SW.v1.0.G016725.1 58 DFYNAYGKQQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSTRWRIVEVELEHNHQV 141 6*******************999*************99888.....9********************************98 PP FAR1 90 a 90 + HL.SW.v1.0.G016725.1 142 S 142 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-21	58	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.3E-27	265	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.728	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.1E-4	560	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MEEVCLNSEP VFDEGDEYDL DGDFSMVEHD VESGETQKKD PPLPTVGLEF DSFDAAYDFY 60 NAYGKQQGFG IRVSNSWFRS KRKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIVI 120 KLVDSTRWRI VEVELEHNHQ VSPQIKRFYK SHKKMILAAK KAQPPPQPVT EVHTIKLYKT 180 AVLDSGCNGY LSFNESEGMS SVDHSKHLEL KEGDAHAVYN YFCRMKLTNP NFFYLMDIDD 240 DGHLRNVFWA DARSRAAYGY FCDTVAIDTT CLANKYEIPL ISFVGVNHHG QSILLGCGFI 300 GHESVDYFLW MLRAWLKCML EKPPRVVITD QCKPLQTAIS EVIPKARHCF CLWYIMHRVP 360 EKLGGLKGYE TIKRQLNKSV YNSLKIAEFE TSWADMIERY GLGDNKWLQM LYEERQLWVP 420 VYLKDIFFAG MIPIQENEGL TAFFDGYVHK HTSFKEFVDK YDLALHRKHM KEVTADLESR 480 NSSSELKTRC NFEVQLSRIY TSEIFKRFQS EVEGMYSCFN TRQVNFNGPI ITYIVKERVE 540 VEGNEKEVKY HEVLFETTQV DIRCICSLFN FKGYLCRHAL NVLNYNGIEE IPSRYILPRW 600 SKDFKCRYLL DHGSSVSSVE MYNNPLYWYT HLNKLSLPVV EEGAQSQERY KTTLQELEAL 660 LNKFNLVEDN LV*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MEEVCLNSEP VFDEGDEYDL DGDFSMVEHD VESGETQKKD PPLPTVGLEF DSFDAAYDFY  60
NAYGKQQGFG IRVSNSWFRS KRKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIVI  120
KLVDSTRWRI VEVELEHNHQ VSPQIKRFYK SHKKMILAAK KAQPPPQPVT EVHTIKLYKT  180
AVLDSGCNGY LSFNESEGMS SVDHSKHLEL KEGDAHAVYN YFCRMKLTNP NFFYLMDIDD  240
DGHLRNVFWA DARSRAAYGY FCDTVAIDTT CLANKYEIPL ISFVGVNHHG QSILLGCGFI  300
GHESVDYFLW MLRAWLKCML EKPPRVVITD QCKPLQTAIS EVIPKARHCF CLWYIMHRVP  360
EKLGGLKGYE TIKRQLNKSV YNSLKIAEFE TSWADMIERY GLGDNKWLQM LYEERQLWVP  420
VYLKDIFFAG MIPIQENEGL TAFFDGYVHK HTSFKEFVDK YDLALHRKHM KEVTADLESR  480
NSSSELKTRC NFEVQLSRIY TSEIFKRFQS EVEGMYSCFN TRQVNFNGPI ITYIVKERVE  540
VEGNEKEVKY HEVLFETTQV DIRCICSLFN FKGYLCRHAL NVLNYNGIEE IPSRYILPRW  600
SKDFKCRYLL DHGSSVSSVE MYNNPLYWYT HLNKLSLPVV EEGAQSQERY KTTLQELEAL  660
LNKFNLVEDN LV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023607.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	M5Y3I6	0.0	M5Y3I6_PRUPE; Uncharacterized protein
STRING	XP_008219518.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]