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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G016542.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
NAC |
| Protein Properties |
Length: 248aa MW: 28075 Da PI: 10.0134 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G016542.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 104.8 | 1.1e-32 | 14 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknr.atksgyWkatg 87
lp G+rF Ptdeel+ +yL++kv++ +l++ +vi+++d+++++Pw Lp v +++ yfF++++k ++k +r sg+Wk
HL.SW.v1.0.G016542.1 14 LPIGYRFCPTDEELLLHYLTRKVHAMPLPA-SVISDFDVFQTDPWALPGDV---KEKRYFFCNHRKMDIlNNKMCKRvNSGSGFWKPVV 98
699***************************.99***************554...4578999999988774566667756779****776 PP
NAM 88 k.dkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
+ dk ++++ +++++g++ktLvf g r + +kt+W+mhey++
HL.SW.v1.0.G016542.1 99 NkDKLIVASefNNQAIGVRKTLVFCGGkRLFQDSKTRWFMHEYHF 143
515666665899999**********774667889*********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MEKQNFGTNG GLKLPIGYRF CPTDEELLLH YLTRKVHAMP LPASVISDFD VFQTDPWALP 60
GDVKEKRYFF CNHRKMDILN NKMCKRVNSG SGFWKPVVNK DKLIVASEFN NQAIGVRKTL 120
VFCGGKRLFQ DSKTRWFMHE YHFVRSQTIT NSLHLISQPQ MNWVVCGVFQ KKRKLNNSKQ 180
RKRNELMMTE GSPRPSFSCS SGVTEVSSSI NGGLLEDDQE ESSANIISYN NGSKSSSSSC 240
TSTRKPN*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-26 | 12 | 172 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-26 | 12 | 172 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-26 | 12 | 172 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-26 | 12 | 172 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-26 | 12 | 172 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 2e-26 | 12 | 172 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 2e-26 | 12 | 172 | 18 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 2e-26 | 12 | 172 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 2e-26 | 12 | 172 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 2e-26 | 12 | 172 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 2e-26 | 12 | 172 | 18 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 2e-26 | 12 | 172 | 18 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 2e-26 | 12 | 172 | 15 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 2e-26 | 12 | 172 | 15 | 166 | NAC domain-containing protein 19 |
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