PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015614.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRF
Protein Properties Length: 536aa    MW: 59228.4 Da    PI: 7.1338
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015614.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.31.3e-23229272144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+ep+rCrRtDGKkWRCsr+v++++k+CErH h++r rsrk++e
  HL.SW.v1.0.G015614.1 229 DQEPWRCRRTDGKKWRCSRNVIPDQKYCERHSHKSRPRSRKHVE 272
                           68****************************************97 PP
2QLQ51.92.3e-18168200234
                   QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                           +FTa+Q q+L++Q ++yKy++a++PvP++Ll +
  HL.SW.v1.0.G015614.1 168 PFTADQRQELERQTMIYKYMMASVPVPHQLLTP 200
                           9*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.0E-10167203IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.8E-12168200IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.182168203IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.788229273IPR014977WRC domain
PfamPF088793.2E-19231272IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MGTRIGFVAS EKGAEKECDV GLGLRMQTND TKSLSSRKMM MMMMSHHHHH DSNEDDDDDD  60
VVVDDEPPLY NNRAFGEEGC ALGGAAGRGG GGTTADGRND GGPSLFCNTS NHINHNNNSN  120
QVVSMANIFN LVGSDSGSLL PKTLLIPNSE TFYNPSGGIM VNANVRVPFT ADQRQELERQ  180
TMIYKYMMAS VPVPHQLLTP FIKSPSNFAY LHSNRVKGAL ELGMSNSSDQ EPWRCRRTDG  240
KKWRCSRNVI PDQKYCERHS HKSRPRSRKH VELQSHFFNN NTTTTTTTTA TTNSNNTRNP  300
YSKPDFLDHQ RKNHQSPFSN SVVSSTATTT SSHDQPRSME WFMNSNQEWQ HMIHTKQNVD  360
MPKQTNERER ALELYNSQGL QQSQGLNDQF SLLLDHKLTP LGGGGVMDSD QTNKTRHFID  420
AWSTAERDHL SEICHSNRYS NSSNDKLPFS SSLALSIHGG NNQSSEVSQN AQMGFGSFLG  480
SGRESEGDVS KSSQWMMMNN PVSWSGSLPP GGPLAEALCL GMSGSTRPPL SRGSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021816537.11e-130growth-regulating factor 8 isoform X1
RefseqXP_021816538.11e-131growth-regulating factor 8 isoform X2
TrEMBLA0A2P5DJT01e-133A0A2P5DJT0_PARAD; Growth-regulating factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-26growth-regulating factor 8