PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G015472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 26865.9 Da PI: 4.7799 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr + +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g HL.SW.v1.0.G015472.1 16 KKYKGVRMRT-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 66 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.48E-18 | 16 | 76 | No hit | No description |
SMART | SM00380 | 9.7E-34 | 17 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.825 | 17 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-11 | 17 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 17 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-20 | 17 | 76 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.8E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEQNPLKPTP LTIGKKKYKG VRMRTWGSWV SEIRAPNQKT RIWLGSYSTA EAAARAYDAA 60 LLCLKGSSAN LNFPLSSTTI SSHQNMIPND VVLSPKSIQR VAAAAANTTT TTFVNDIISI 120 NTATATAAPA ATTTATTTAA TSSSPSPSSS SSSAVSSPFD LVDDEASLRG SFGSHIDMTN 180 YDYHQQQQGG VISHIDQSMA MMESWYNFDG LQSPNIDQML YNGCTSLFDP QFMEDQYEES 240 DIPLWSFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-15 | 16 | 75 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868603.1 | 3e-62 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | A0A2P5DSU9 | 2e-95 | A0A2P5DSU9_TREOI; AP2/ERF domain containing protein | ||||
STRING | GLYMA14G22970.2 | 3e-56 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-32 | ERF family protein |