PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G015190.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HB-other

Protein Properties

Length: 360aa MW: 40243 Da PI: 8.2277

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G015190.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.5	2e-12	34	69	22	57
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + yps++ r+eL+kkl Lt+rq ++WF+ rR k+kk HL.SW.v1.0.G015190.1 34 EAYPSETIRAELSKKLALTDRQLQMWFCHRRLKDKK 69 57********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0028	18	74	IPR001356	Homeobox domain
Pfam	PF00046	6.9E-10	34	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-8	34	70	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-10	35	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.147	36	70	IPR001356	Homeobox domain
CDD	cd00086	3.37E-7	36	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEAASEEENR IKNDHNVNNK INSSNEGQSK PKLEAYPSET IRAELSKKLA LTDRQLQMWF 60 CHRRLKDKKE GGPAKKQRKM VAAMPESPPI DELRVGAEPG SDYGSGSGSG SSPFGPSAEL 120 RNVTSRSLGD DMPMGRRYYE PRQSKMELRA IAIVEAQLGE PLREDGPVLG IEFDSLPPDA 180 FGAPIVAEQQ KRSGHRYEGK SYDRHDAKSN KATPRALHEY PFLPDPSSAH NDVYGQVSQP 240 HIHNSANEQL PRSQGHGSRV RLSSGPDKQG IPFPSPSVDD TSLPKDSFTN IRVNPHTSDN 300 PIISPENTYV LPDGQICPNE ALLRMERKRK IEEARIAKEA EIQEIRMRKE LEKQENLKKK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEAASEEENR IKNDHNVNNK INSSNEGQSK PKLEAYPSET IRAELSKKLA LTDRQLQMWF  60
CHRRLKDKKE GGPAKKQRKM VAAMPESPPI DELRVGAEPG SDYGSGSGSG SSPFGPSAEL  120
RNVTSRSLGD DMPMGRRYYE PRQSKMELRA IAIVEAQLGE PLREDGPVLG IEFDSLPPDA  180
FGAPIVAEQQ KRSGHRYEGK SYDRHDAKSN KATPRALHEY PFLPDPSSAH NDVYGQVSQP  240
HIHNSANEQL PRSQGHGSRV RLSSGPDKQG IPFPSPSVDD TSLPKDSFTN IRVNPHTSDN  300
PIISPENTYV LPDGQICPNE ALLRMERKRK IEEARIAKEA EIQEIRMRKE LEKQENLKKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	69	RRLKDKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031043.1	1e-143	homeobox-DDT domain protein RLT1 isoform X1
Refseq	XP_024031044.1	1e-143	homeobox-DDT domain protein RLT1 isoform X1
TrEMBL	A0A2P5CI27	1e-165	A0A2P5CI27_TREOI; Octamer-binding transcription factor
STRING	XP_010111176.1	1e-139	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15781	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	4e-47	homeobox-1