PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014375.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 721aa    MW: 79516.5 Da    PI: 5.1287
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014375.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.35.6e-3046130187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+laL+++r+em++ +r++ lk+plWe+vs+k++e g++rs k+Ckek+en++k+yk++keg+ +r  ++ +t+++f++lea
  HL.SW.v1.0.G014375.1  46 RWPRQETLALLRIRSEMDTVFRDATLKGPLWEDVSRKLAELGYNRSGKKCKEKFENVHKYYKRTKEGRAGR--QDGKTYKFFTELEA 130
                           8********************************************************************98..56667******985 PP
2trihelix110.11.3e-34445530187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k evlaLi++r+ +e++++++  k+plWee+s+ m++ g++rspk+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf++l+a
  HL.SW.v1.0.G014375.1 445 RWPKPEVLALIKFRSGLESKFQEAGPKGPLWEEISAEMQRMGYKRSPKRCKEKWENINKYFKKVKESNKQR-PEDAKTCPYFHELDA 530
                           8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0143105IPR001005SANT/Myb domain
PfamPF138375.4E-2145131No hitNo description
CDDcd122031.11E-2645110No hitNo description
PROSITE profilePS500907.00445103IPR017877Myb-like domain
SMARTSM007170.013297504IPR001005SANT/Myb domain
PROSITE profilePS500906.98444502IPR017877Myb-like domain
PfamPF138375.0E-24444531No hitNo description
CDDcd122031.56E-30444509No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEQGGQQLPV EAASPISSRP PAASSVNLDE YMAMSSGGGG GGGGNRWPRQ ETLALLRIRS  60
EMDTVFRDAT LKGPLWEDVS RKLAELGYNR SGKKCKEKFE NVHKYYKRTK EGRAGRQDGK  120
TYKFFTELEA LHATTAIATA TATAAPQPPH LLPPPPSLGV GISNPMPISS FPANINITPP  180
TYSTMPPAST PAPPPSQKPI TAAPVAATSF SSNSSSSSPG SEDDEDDEDD DVFEGGPSNP  240
AVVGSSRKRK RDWSSRHSAS TMEFFENLMK QVMQKQEAMQ QRFLEVIEKR EQDRMIRDEA  300
WKRQEMARLS REHELMAQER TISASRDAAI ISFLQKITGQ TIHLPDPPPP PPPLNTTTGI  360
NPNVTIHVPT PTVPPPAPAP VVAAAVPPVI TQQHHDQQQL VIERRQSPSA DRYQTPSRSS  420
SQQPQQQPQQ QQHDQTFTGG TASSRWPKPE VLALIKFRSG LESKFQEAGP KGPLWEEISA  480
EMQRMGYKRS PKRCKEKWEN INKYFKKVKE SNKQRPEDAK TCPYFHELDA LYRKKIIGSG  540
SITPAAQLPQ PQPPQEPQSD FRRATVAAVD NQAPKTAAAQ VQPAAAANIG TENKSSVAAH  600
SGFGQATEKP EDIVMELMKV HEQEKCGGGT QAVLVPLVND YDRLEELVDS ENEDDDDDDD  660
DQDDEEDEDE EEEDIIIDRA DDVERKMANY KMQFQRQSTG PSNGGTGNES PSSFLAMPMV  720
Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210347.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2P5AVY90.0A0A2P5AVY9_PARAD; GAMYB transcription factor
STRINGEMJ115460.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-45Trihelix family protein