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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G014352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10393.6 Da PI: 8.4485 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 15 | 62 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +WT+ + + +a +++ ++ +W +a+ +g ++t +++k ++q +l HL.SW.v1.0.G014352.1 15 SWTAKQNKSFERALALFDKDtpdRWQNVAKAVG-NKTVEEVKIHYQVLL 62 7********************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.307 | 8 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-6 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.67E-13 | 14 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-4 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-5 | 15 | 62 | No hit | No description |
Pfam | PF00249 | 1.1E-6 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MASSSLNKQS YYSSSWTAKQ NKSFERALAL FDKDTPDRWQ NVAKAVGNKT VEEVKIHYQV 60 LLDDLRKIES GRVPIPNYKF TNFDEEQSCT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-29 | 16 | 82 | 11 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024030285.1 | 1e-40 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 6e-32 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2P5EKG0 | 1e-45 | A0A2P5EKG0_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010088931.1 | 1e-40 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 2e-33 | RAD-like 6 |