PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014206.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 524aa    MW: 57242.7 Da    PI: 7.1221
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014206.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.1e-32312367156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  HL.SW.v1.0.G014206.1 312 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 367
                           68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.45E-17309370IPR009057Homeodomain-like
PROSITE profilePS5129413.355309369IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-28310370IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-26312367IPR006447Myb domain, plants
PfamPF002499.6E-7314365IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MMASPSELSL ECKPAHGYSM LLKSFGEHQH SHQQHHHLQQ QQPQVAQHDH THKLEDYLNR  60
LEEERLKIEA FKRELPLCMQ LLTSAVEASR QQLQDYRTNQ GPIRPVLEEF IPLKTSSSEG  120
SADQKITNAP DNKANWMTSA QLWSQSSSND GTKPQPTNNS NSNIVTPKEA DISFNVVSPK  180
LALDNKLSQR LNGPAGAFLP FSKDSNRNNN NSIPNQSFRP LPELALSAAT AEKDIMGEEN  240
HKCSSEAERR ENSGNNGNGG VVVETGKGGV AGNNNSSNIN GSDHHQGVQT NNNNNNNNNS  300
SSTTNNNQTH RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH  360
LQKYRLHTRR PSPQAPGTPA PQLVVLGGIW VSEYSAAAAH NGAQTALYSS HAASHAPPPH  420
YCAPPVPQDF YASQAQAQAQ GMPHHHALHH QLQMYKATSQ THSSPESDVR GAGGDRSESI  480
EDGKSESSSW KGESGDNGAE RKGLAALRED GEESNGSEIT LKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13312365255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13312365255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13312365154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13312365154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13312365154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13312365154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13312365255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13312365255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13312365255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13312365255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13312365255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13312365255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098958.10.0myb family transcription factor EFM
TrEMBLA0A2P5AZB10.0A0A2P5AZB1_TREOI; GARP transcription factor
STRINGXP_010098958.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-55G2-like family protein