PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014064.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 380aa    MW: 41811.9 Da    PI: 6.9118
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014064.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.7e-17278311134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  HL.SW.v1.0.G014064.1 278 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 311
                           99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-16272322IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503272308IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15276335No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14276310IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.75E-14277326No hitNo description
PROSITE patternPS003440278303IPR000679Zinc finger, GATA-type
PfamPF003206.0E-15278311IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MREKERENFN ITTERGKMEE RDRNGEKISY FEKMIGPNFM DDIDCGFFDH IDDLLDFPSD  60
DVDAGLGPST DSKSFPSIWS TQSNSLPGSD SVFSGNSASD LSAELSVPYE DIVQLEWLST  120
FVEDSFSGGS LTMNKEESFS LNKDSSRQQF QTSSPVSVLE SSSSCSGEKS GPRSPEATTP  180
GGRRGRARSK RPRPATFNPR PAIQLISPTS SVIDTPLPFV TPKSSSDSEN FAESRPMIKI  240
PRQIPVDQKK KKKIRLTFPA PPMEMNQNPT LQAAVRKCMH CEITKTPQWR AGPMGPKTLC  300
NACGVRYKSG RLYPEYRPAA SPTFIPALHS NSHKKVLEMR NKGGELIAVA GTSSAMTLNE  360
TTTPELIPNT NSSISLDYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092608.11e-174GATA transcription factor 8
TrEMBLA0A2P5D3U40.0A0A2P5D3U4_TREOI; GATA transcription factor
STRINGXP_010092608.11e-174(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-44GATA family protein