PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Nin-like

Protein Properties

Length: 972aa MW: 107172 Da PI: 5.6404

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G014000.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.6e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ HL.SW.v1.0.G014000.1 599 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.12	582	670	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.08E-21	870	955	No hit	No description
SMART	SM00666	4.9E-20	871	953	IPR000270	PB1 domain
PROSITE profile	PS51745	22.118	871	957	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.1E-24	871	953	No hit	No description
CDD	cd06407	1.43E-29	872	952	No hit	No description
Pfam	PF00564	1.5E-17	874	952	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MEQPFSSKER ENDYWSSSRA QVESLPSSDG VPRGMLPEDV FNSFSELLSF DTYVGWSNNP 60 TVTDQVSATY GLSSFPSTIY TPQDGSDFIE QDVEARSVTE VGGNLNLPRS SFDYGEKVVF 120 QPEDTQFEAS AHSNNGSDSV AKQNNGFFQE NSEIDMANST IQRPARFSLD EKMLKALSFV 180 KETSGGGILA QVWVPVRRGD QLILSTSEQP YLLDHMMVGY REVSRMYTFS AEGKPGCFPG 240 LPGRVFQSKI PEWTSDVRYY KKNEYVRVEH AYDHHVRGCI ALPVCEPDLR MTCCAVLEIV 300 TTREKQNFDA EIEIVSNALQ AVDLRMNQPP RLNPQCLSKN QKDALAEIID VLRAVCHAHR 360 LPLALTWIPC YGEGTSNEGA GVRVKEGKSS SSEKCILCVE KAACYVNDRL MQGFAHACVE 420 HHLEVGQGLA GKALQSNLPF FFPDVKTYDI SDYPLVHHAR KFGLNAAVAI RLRSTYTGDC 480 DYILEFFLPV NMKGASEQQL LLNNLSSTMQ RICKSLRTVS DVEVGIISHD TFQEGSVPNF 540 MSLPGDSSKM AQSDNDLNSA NELPLKLSAR KNEAHEADSV HEQTTRGTRR QTEKKRSTAE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LDSVQGVEGG LKFDPTTGGL VAAGSISQEF ESQKIPFFVE KTASLQNSDP TLTVKLEEDE 720 CCTDGINSNS YKIRNPNIIT PTNSTKDSKI AIKAVSKPVS GAFSEKISLG SYHATEGMTS 780 SHSKCSSKFE NSDGHHVSWI SGSLAVGNEM DTAEDGENAE LVEHNQPASS SMTDSSNGRG 840 SMLHGSSSSS QSFEEHKHPK GKTSCADSCS KIIVKATYRE DTVRFKFDTS GGCYQLYEEV 900 AKRFKLQTGT FQLKYLDDEE EWVMLVSDMD LQECLEILDD VGTQSVKFQV RDMPCVVGSS 960 GSSNCFLAGG S*

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MEQPFSSKER ENDYWSSSRA QVESLPSSDG VPRGMLPEDV FNSFSELLSF DTYVGWSNNP  60
TVTDQVSATY GLSSFPSTIY TPQDGSDFIE QDVEARSVTE VGGNLNLPRS SFDYGEKVVF  120
QPEDTQFEAS AHSNNGSDSV AKQNNGFFQE NSEIDMANST IQRPARFSLD EKMLKALSFV  180
KETSGGGILA QVWVPVRRGD QLILSTSEQP YLLDHMMVGY REVSRMYTFS AEGKPGCFPG  240
LPGRVFQSKI PEWTSDVRYY KKNEYVRVEH AYDHHVRGCI ALPVCEPDLR MTCCAVLEIV  300
TTREKQNFDA EIEIVSNALQ AVDLRMNQPP RLNPQCLSKN QKDALAEIID VLRAVCHAHR  360
LPLALTWIPC YGEGTSNEGA GVRVKEGKSS SSEKCILCVE KAACYVNDRL MQGFAHACVE  420
HHLEVGQGLA GKALQSNLPF FFPDVKTYDI SDYPLVHHAR KFGLNAAVAI RLRSTYTGDC  480
DYILEFFLPV NMKGASEQQL LLNNLSSTMQ RICKSLRTVS DVEVGIISHD TFQEGSVPNF  540
MSLPGDSSKM AQSDNDLNSA NELPLKLSAR KNEAHEADSV HEQTTRGTRR QTEKKRSTAE  600
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LDSVQGVEGG LKFDPTTGGL VAAGSISQEF ESQKIPFFVE KTASLQNSDP TLTVKLEEDE  720
CCTDGINSNS YKIRNPNIIT PTNSTKDSKI AIKAVSKPVS GAFSEKISLG SYHATEGMTS  780
SHSKCSSKFE NSDGHHVSWI SGSLAVGNEM DTAEDGENAE LVEHNQPASS SMTDSSNGRG  840
SMLHGSSSSS QSFEEHKHPK GKTSCADSCS KIIVKATYRE DTVRFKFDTS GGCYQLYEEV  900
AKRFKLQTGT FQLKYLDDEE EWVMLVSDMD LQECLEILDD VGTQSVKFQV RDMPCVVGSS  960
GSSNCFLAGG S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031921.1	0.0	protein NLP8
Refseq	XP_024031922.1	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2P5G0I9	0.0	A0A2P5G0I9_TREOI; NIN-like transcription factor
STRING	XP_010112531.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]