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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G013174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | FAR1 | ||||||||
Protein Properties | Length: 111aa MW: 13021.9 Da PI: 8.8371 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.8 | 1.7e-13 | 47 | 110 | 2 | 66 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkakl 66 fY+ Y k vGFsvr++ +k++ +g+i r++vCs+eg+r+e + ++++r++ tr+gC+a++ HL.SW.v1.0.G013174.1 47 FYKPYTKWVGFSVRIDDTKYR--DGSISIRRWVCSNEGFRREIFMNlPNRKKRPKDITRCGCQAEI 110 9***************98887..999****************98887889999**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.1E-11 | 47 | 110 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MTDIDLSSNP HWEEILSSLQ LYKRVAEKDT NDILGKEMNT LDKLEAFYKP YTKWVGFSVR 60 IDDTKYRDGS ISIRRWVCSN EGFRREIFMN LPNRKKRPKD ITRCGCQAEI * |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15947 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-09 | FAR1 family protein |