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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G012903.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family |
MYB |
| Protein Properties |
Length: 370aa MW: 41612.6 Da PI: 6.5797 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G012903.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.5 | 2e-15 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl
HL.SW.v1.0.G012903.1 34 KGLWSPEEDERLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 81
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 49.4 | 1e-15 | 87 | 131 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++E+ l+++++ lG++ W+ Ia++++ gRt++++k++w++
HL.SW.v1.0.G012903.1 87 RGAFSPQEEHLILHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 131
89********************.*********.***********986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MRKGNSDYDD DSGSGRSSSK NNSNKKVVAV AMRKGLWSPE EDERLMRYML TNGQGCWSDI 60
ARNAGLQRCG KSCRLRWINY LRPDLKRGAF SPQEEHLILH LHSILGNRWS QIAARLPGRT 120
DNEIKNFWNS TLKKRLKLVN NNTSTTTTTT TTTSSSSPND SNSSEQDQPP PPPLFTADHP 180
VLNNNNNVGD QAQQPMLTQQ VPMHSDYYYY DYSSCSSSTT TVPGQFDPFC THIIPDYTTP 240
TTTTTTTHNA DSFGYHNSSS DHHNHIINLG DYGVLETARD HDHDQCLFGL PQLESCRTKI 300
EENHHHHHHN MASLTDIRAS TTTTNNNSSI SIGHDHHQLQ GENLKFGEWD LEGLMMQDIS 360
SFSFLDFQG*
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