PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G012903.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 370aa    MW: 41612.6 Da    PI: 6.5797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G012903.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-153481148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  HL.SW.v1.0.G012903.1 34 KGLWSPEEDERLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 81
                          678*******************************************97 PP
2Myb_DNA-binding49.41e-1587131147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+++++E+ l+++++  lG++ W+ Ia++++ gRt++++k++w++ 
  HL.SW.v1.0.G012903.1  87 RGAFSPQEEHLILHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 131
                           89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.222981IPR017930Myb domain
SuperFamilySSF466891.84E-2832128IPR009057Homeodomain-like
SMARTSM007175.1E-113383IPR001005SANT/Myb domain
PfamPF002497.7E-143481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-233588IPR009057Homeodomain-like
CDDcd001672.04E-93781No hitNo description
PROSITE profilePS5129425.18682136IPR017930Myb domain
SMARTSM007171.6E-1486134IPR001005SANT/Myb domain
PfamPF002491.1E-1487131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2589136IPR009057Homeodomain-like
CDDcd001674.04E-1089132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRKGNSDYDD DSGSGRSSSK NNSNKKVVAV AMRKGLWSPE EDERLMRYML TNGQGCWSDI  60
ARNAGLQRCG KSCRLRWINY LRPDLKRGAF SPQEEHLILH LHSILGNRWS QIAARLPGRT  120
DNEIKNFWNS TLKKRLKLVN NNTSTTTTTT TTTSSSSPND SNSSEQDQPP PPPLFTADHP  180
VLNNNNNVGD QAQQPMLTQQ VPMHSDYYYY DYSSCSSSTT TVPGQFDPFC THIIPDYTTP  240
TTTTTTTHNA DSFGYHNSSS DHHNHIINLG DYGVLETARD HDHDQCLFGL PQLESCRTKI  300
EENHHHHHHN MASLTDIRAS TTTTNNNSSI SIGHDHHQLQ GENLKFGEWD LEGLMMQDIS  360
SFSFLDFQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-272513618128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759455.16e-90transcription factor MYB83-like
TrEMBLA0A2P5E6Y11e-98A0A2P5E6Y1_TREOI; MYB transcription factor
STRINGGLYMA12G36630.14e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-60myb domain protein 46