 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G012853.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 342aa MW: 39060.8 Da PI: 7.0932 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G012853.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.3 | 1.3e-18 | 94 | 146 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe+ +++ e++ +LAk lgL+ rqV +WFqNrRa++k
HL.SW.v1.0.G012853.1 94 KKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWK 146
4568889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 131.2 | 3.9e-42 | 92 | 184 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
ekk+rl+ eqvk+LE+sFe+ +kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L++++++L++
HL.SW.v1.0.G012853.1 92 EKKKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLERDYDVLKKQFDVLKADNDSLQDQNKKLHA 180
69**************************************************************************************9 PP
HD-ZIP_I/II 90 elke 93
el++
HL.SW.v1.0.G012853.1 181 ELSS 184
9975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MAFPPHSFIF QSHQEDHRHQ QDHHHHLAPS TSSHHHPFHG GHHHAPFMMK RSLSFSGADE 60
NNHNHSNIIN KCTEEMLHGE DELSDDGSQL GEKKKRLNLE QVKTLEKSFE MGNKLEPERK 120
MQLAKALGLQ PRQVAIWFQN RRARWKTKQL ERDYDVLKKQ FDVLKADNDS LQDQNKKLHA 180
ELSSLKGRDI SNDSGRDHHH HHHHHHHQNF KKEAADQGSW SNGSDENSSD VNLDISRPPL 240
INTTTTTTTT SSASSQLVQN LFPSTLRPSS ITQLLQGSSS SRSDFQCLKQ ADPHHHHQLV 300
QSEESFCNLF VNGTTAATAT AGVEDQQPSF WPWPEQHNYF H*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 140 | 148 | RRARWKTKQ |
