PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB

Protein Properties

Length: 241aa MW: 27390.8 Da PI: 7.3669

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G012661.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	19	64	4	47
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT eEd+l+ +a + + +W++Ia++++ g++ +++ +++++ HL.SW.v1.0.G012661.1 19 WTREEDKLFEKALVDFAHDlpnRWDRIASRLP-GKSIPDVIRHYNDL 64 *******99997777777777*****.*********986 PP
2	Myb_DNA-binding	47.9	3.1e-15	116	160	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++++ k++G+g+W++I+r + +Rt+ q+ s+ qky HL.SW.v1.0.G012661.1 116 PWTEEEHKLFLKGLKLFGKGDWRSISRNVVITRTPTQVASHAQKY 160 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.0E-6	15	67	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.48E-11	17	73	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.166	19	65	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.1E-5	19	65	IPR009057	Homeodomain-like
CDD	cd00167	3.66E-8	19	65	No hit	No description
Pfam	PF00249	1.2E-7	19	64	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.832	109	165	IPR017930	Myb domain
SuperFamily	SSF46689	4.07E-17	111	166	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.3E-17	112	163	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.5E-11	113	159	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-13	113	163	IPR001005	SANT/Myb domain
CDD	cd00167	5.92E-11	116	161	No hit	No description
Pfam	PF00249	1.0E-13	116	160	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MFQEARDWNM ATQPYSTWWT REEDKLFEKA LVDFAHDLPN RWDRIASRLP GKSIPDVIRH 60 YNDLVHDVME IDSGRVALPS YTDCSAEGLN GWDSANQISF GSKAKQAEPE RKKGTPWTEE 120 EHKLFLKGLK LFGKGDWRSI SRNVVITRTP TQVASHAQKY FLRLESGPKE RKRSSIHDIT 180 TVDGISDSVP SDQMCLHPPP PPNQSQQFPT IQQLNSPPNH MTMATTHGGP MGYQHYGFQM 240 *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00055	PBM	Transfer from AT5G04760	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018813691.1	1e-92	PREDICTED: transcription factor DIVARICATA
Swissprot	Q8S9H7	2e-63	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2P5BG15	1e-119	A0A2P5BG15_TREOI; GAMYB transcription factor
STRING	XP_007142868.1	4e-90	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6068	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	8e-61	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]