PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G012015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | EIL | ||||||||
Protein Properties | Length: 577aa MW: 65491.2 Da PI: 7.4736 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 524.8 | 3.5e-160 | 4 | 384 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 +el++rmw+d+mll+rlke +k k+ ++++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd HL.SW.v1.0.G012015.1 4 DELERRMWRDRMLLRRLKEHSKG----KQG-VDNAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASD 87 79******************998....566.8999****************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS EIN3 90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178 +LraWWkekv+fdrngpaai+kyqa++ i+++++++++ s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtG+e HL.SW.v1.0.G012015.1 88 NLRAWWKEKVRFDRNGPAAIAKYQAEHSIPGQNEDCSS-MASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPTGSE 175 ************************************77.99************************************************ PP HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX CS EIN3 179 lwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss 265 +ww++lg++kdqg+ppykkphdlkkawkvsvLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+++++++++ ++ HL.SW.v1.0.G012015.1 176 EWWPQLGMPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDrcPP 264 *************************************************************************************9766 PP XXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXX................................XXXXXXXXXXXXXXXXXXX CS EIN3 266 slrkqspkvtlsceqkedve.gkkeskikhvqavktta................................gfpvvrkrkkkpsesakvs 321 + +++ ++++s+ +++dv+ +++e++ +v+++k ++ + ++v+krk+ +e+++++ HL.SW.v1.0.G012015.1 265 MSASGNGSLVISETSDYDVDgVDDEPN-FEVEECKPRDvgrfnmgtivpsrdrmlmpqvaprikgeiietSPDFVQKRKQLGDEPQMMM 352 7788****************6666666.88999999999******************************9999******9999999999 PP XX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 322 skevsrtcqssqfrgsetelifadknsisqney 354 ++++ +tc+ sq+++++++l+f d++s++++++ HL.SW.v1.0.G012015.1 353 DQKI-YTCEYSQCPYHDYRLGFLDRTSRNNHQM 384 9976.**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 9.4E-131 | 4 | 251 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 2.4E-76 | 124 | 261 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 4.84E-62 | 130 | 254 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MDVDELERRM WRDRMLLRRL KEHSKGKQGV DNAKQRQSQE QARRKKMSRA QDGILKYMLK 60 MMEVCKAQGF VYGIIPEKGK PVTGASDNLR AWWKEKVRFD RNGPAAIAKY QAEHSIPGQN 120 EDCSSMASTP HTLQELQDTT LGSLLSALMQ HCDPPQRRFP LEKGVAPPWW PTGSEEWWPQ 180 LGMPKDQGPP PYKKPHDLKK AWKVSVLTAV IKHMSPDIAK IRKLVRQSKC LQDKMTAKES 240 ATWLAIINQE EALARKLYPD RCPPMSASGN GSLVISETSD YDVDGVDDEP NFEVEECKPR 300 DVGRFNMGTI VPSRDRMLMP QVAPRIKGEI IETSPDFVQK RKQLGDEPQM MMDQKIYTCE 360 YSQCPYHDYR LGFLDRTSRN NHQMNCAYRP NPSQASQQTF AMPSFQISND KPAVFSLPFS 420 QPKPAAASQQ MNQTSHFTGL DIPEDGQKMI SDLMSLYDSN AQQRNKALNP GNHPVPTNME 480 NINQPQQKYQ FQMDDSFFGQ GVMGGNMSEQ ANISSQQAVY SSAEVQFDQC KAFDSPFDNN 540 PNDNIADLRF ASPFNMAPVE FSVDSLPKQD VSLWYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 1e-83 | 128 | 260 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 1e-83 | 128 | 260 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106128.2 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2P5EMJ2 | 0.0 | A0A2P5EMJ2_TREOI; Ethylene-insensitive protein | ||||
STRING | XP_010106128.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |