PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011859.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 438aa MW: 47851.6 Da PI: 8.02

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011859.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	3e-17	30	74	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+++++da k++G g W+ I +++g ++t+ q++s+ qk+ HL.SW.v1.0.G011859.1 30 REKWTEEEHQKFLDALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 74 789*****************.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.14E-16	24	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.276	25	79	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.7E-16	28	77	IPR006447	Myb domain, plants
SMART	SM00717	4.4E-13	29	77	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	30	73	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-9	30	70	IPR009057	Homeodomain-like
CDD	cd00167	3.23E-11	32	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MVVESEDMGL TEIYESAPKA RKPYTITKQR EKWTEEEHQK FLDALKLYGR GWRQIEEHVG 60 TKTAVQIRSH AQKFFSKVVR GSTGNVEGSV QPIAIPPPRP KKKPMHPYPR KSVDSLNVSV 120 LHQSERSPSP SFTHTDKGVK SPTSVLSSHG SDALGSAAYD QHNRSPSMSS TTDMHSISLS 180 PLEKNGCLLS NSSNEEKSSL PANQFSASPT MENVLSLKSE LGAKDTEHTK EETKLSTSTS 240 FKLFGKIVLL SDLGKEPPSG LEGSKTLQSN QMPVSELFPD KLGTDLSLGG IVGDSHPLAC 300 GASINLLEQQ KESSNVVKGN ASVLQWSCNY ITTNNNPSIE ETYLISCAEG KSKDKEVQKE 360 RSCTGSNEGS ASKVETLGDT NIEGVDSFSQ EPRTKVSVEP CNSRKGFVPY KRCLAERDNM 420 SSAIKTNDRE RQKIRVC*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MVVESEDMGL TEIYESAPKA RKPYTITKQR EKWTEEEHQK FLDALKLYGR GWRQIEEHVG  60
TKTAVQIRSH AQKFFSKVVR GSTGNVEGSV QPIAIPPPRP KKKPMHPYPR KSVDSLNVSV  120
LHQSERSPSP SFTHTDKGVK SPTSVLSSHG SDALGSAAYD QHNRSPSMSS TTDMHSISLS  180
PLEKNGCLLS NSSNEEKSSL PANQFSASPT MENVLSLKSE LGAKDTEHTK EETKLSTSTS  240
FKLFGKIVLL SDLGKEPPSG LEGSKTLQSN QMPVSELFPD KLGTDLSLGG IVGDSHPLAC  300
GASINLLEQQ KESSNVVKGN ASVLQWSCNY ITTNNNPSIE ETYLISCAEG KSKDKEVQKE  360
RSCTGSNEGS ASKVETLGDT NIEGVDSFSQ EPRTKVSVEP CNSRKGFVPY KRCLAERDNM  420
SSAIKTNDRE RQKIRVC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023521.1	1e-165	protein REVEILLE 7 isoform X1
Refseq	XP_024023522.1	1e-166	protein REVEILLE 7 isoform X2
TrEMBL	A0A2P5CQD8	0.0	A0A2P5CQD8_TREOI; GAMYB transcription factor
STRING	XP_010099677.1	1e-165	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7313	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	2e-43	MYB_related family protein