PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011761.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 401aa    MW: 45047.2 Da    PI: 6.7027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011761.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-094996354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            +  rE+ RRdr+N+ f eL ++l ++     +K++Ka+iL+ +++ +k+L
  HL.SW.v1.0.G011761.1 49 LQKADREKLRRDRLNEHFIELGSVLDPD----RPKNDKATILTDTIQLLKDL 96
                          56778*******************9997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1446116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.5034696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1246118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-847100No hitNo description
PfamPF000102.6E-74996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-852102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MNQLQHDEFI QSPNPPSDPR LPSTSVRSQP SSSQRPEGET KDGTVARKLQ KADREKLRRD  60
RLNEHFIELG SVLDPDRPKN DKATILTDTI QLLKDLTSQV DKLKAEYTML NEESRELTLE  120
KNDLREEKTS LKSDIENLNV QCQQRVRTMF PWAAMDHSVV MAPTSYPYPV PMPMPQGPIP  180
MHPHMQPYPY YGNQNPGVIP NPCSTFVPYI TPTTLVEQQS QQYVTPIVQP VSRSNVSGKQ  240
DSRNKSSGES KIEKSEDSSD VATNLELKTP GSATDQDSGQ GQSQRYVSKE NKITERSSSS  300
RCSSSRSVQD SSSNSIEGQK RWPRSKILSH HLNSNNCFLV CTESVLMKAA DKVHNPHKPL  360
TTYLGEDSHH SIHILPTLVF LPCTTTWQNE EDPHDYLAGN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893436.11e-158transcription factor bHLH121-like
SwissprotQ9LT235e-94BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2P5ED011e-176A0A2P5ED01_TREOI; Basic helix-loop-helix transcription factor
STRINGEOX977581e-147(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-76bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]