PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011680.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 360aa    MW: 40075 Da    PI: 6.231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011680.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14161212155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A+e++k+L+
  HL.SW.v1.0.G011680.1 161 QRMTHIAVERNRRKQMNEHLAVLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 212
                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16159229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12159216No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13159215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-11161212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10166217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MALEALPNSN ELFNFVIYDT ISATPCSCQG SSATTTNWLC NENNDSCATN STKPHHHNLH  60
NNDHQVGALE SSLLVSRKLQ MGAEEGGEDD KSGLGGGARC DDDYDDNNNE EEEQGQGQGQ  120
GQGQGHGRMM MRRQPSLGVV VRKKRKRKPR VCKNKEEAET QRMTHIAVER NRRKQMNEHL  180
AVLRSLMPDS YVQRGDQASI VGGAIEFVKE LEHLLQSLEA QKLQVLQGMN NNRELVDDDD  240
HNKESCNIDY TWSQISNKYT SKTKAAIADI EVTLIETHAS LRIFTRRSPR QLSRLIAGFQ  300
SLHLTVLHLN VTTLNPLVLY SVSVKVEEAC LLSSVDDIAA AVHHMLRIIE EEAAMPMCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146RKKRKR
2141147RKKRKRK
3142147KKRKRK
4161172RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN6460800.0FN646080.1 Humulus lupulus mRNA for basic helix-loop-helix transcription factor (bHLH1 gene), cultivar Osvald's 72, clone 2512.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096553.11e-128transcription factor bHLH71
SwissprotQ9C7T47e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLE3PA311e-170E3PA31_HUMLU; Basic helix-loop-helix transcription factor
STRINGXP_010096553.11e-128(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-63beta HLH protein 71
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]