PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011200.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family FAR1
Protein Properties Length: 304aa    MW: 34969.1 Da    PI: 8.617
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011200.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1522.3e-1641130290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                           f  eY   vGFs++k ++++  r g+i +r++ Cs++gkr e + k ++ +r++++ tr++Ck  ++v+ +k d++w   ++ + H+H+
  HL.SW.v1.0.G011200.1  41 FITEYVMVVGFSICKGHMRRG-RLGNIQEREWLCSRQGKRMECHVKrHDITRKPKPLTRVDCKVAFRVNWRKyDNTWICREFITTHSHP 128
                           778999***********9998.7788**************9987764677899****************9999**************** PP

                  FAR1  89 la 90 
                           la
  HL.SW.v1.0.G011200.1 129 LA 130
                           96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1441130IPR004330FAR1 DNA binding domain
PfamPF105512.0E-26208300IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNMEDTPTIF EKYGIEEDLV GLTRDDMVGH SFESLELAEE FITEYVMVVG FSICKGHMRR  60
GRLGNIQERE WLCSRQGKRM ECHVKRHDIT RKPKPLTRVD CKVAFRVNWR KYDNTWICRE  120
FITTHSHPLA ADAHKQFLRS NRVVTPGYAA IATSLREAGG QLVTWSTKLM TTNSFFGRYS  180
VHKGNKLQHI FWADARARSD YEYFGHAVAL DSTYKTNAYG KPLLVWVGVN NHYKTCIFGF  240
TLLDNESAPS YIWAAQQFLG CMGGVHPKTV VTDSDPALKT MMEETMPNTI HRLCYCHMHN  300
KAII
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.27e-33far-red elongated hypocotyls 3