PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011154.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 912aa    MW: 100758 Da    PI: 8.3565
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011154.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25e-07184203525
                           --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           lC++f + G C++G++C+F H
  HL.SW.v1.0.G011154.1 184 LCKDFTA-GRCRRGNNCPFLH 203
                           9******.************* PP
2zf-CCCH19.71.5e-06243263526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           lC++f + G C++G++CkF Hg
  HL.SW.v1.0.G011154.1 243 LCNDFVK-GRCRRGASCKFEHG 263
                           8******.***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.507179206IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5181205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5181204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6183207IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4184203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399238265IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4240264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5243266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915301328IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037301327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5304326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MSGSGRKRSS KWDLRDQPKF EDINAQDDGW PGKTGRSVYQ RESGHGWQSP ELPGSNGLKW  60
SALDTNDMRS KHDSVFLARD TFSGSRGSHK NENIDKDCNR YVSDSMAWDA DEDYGTRMSP  120
GLDEWRQQHH SQSPKSGWSR DRSGSRSRSR SRSRGRSRSP VRGLRRESGF LDRSRSRSGV  180
SNQLCKDFTA GRCRRGNNCP FLHEDSEAYE DYWDSRHRKG GSSKYSTLDT RDYSLRSGRS  240
SGLCNDFVKG RCRRGASCKF EHGASDGFSK GPMNEVTRDK ETDRRRRDTS DERGVEHEAR  300
RNSDIPCKFF AAGNCRNGKH CRFSHHNQAY SSPDRKSQDK WALGRKSDDV NQAWDGPKWS  360
DTGIALDAAK FTENISGNVG ALNGSSTAWS MSERLGNRVN NENITSGADL NVSCEAAITN  420
EKEPIRWKTD NVGAGMGLSE VRRTDKWLDD MDMSPDWNYA VPSATHVVKE EHSRATQRSE  480
SLNEMHVTSS KQSIIPEASG RINGAPGAVQ PIIIEKSVFQ PKHDLRDDSA IALPYDNNDV  540
VRKTGNSGAD LNIFDQNCQP ASVFPFSNLN TIGQSQAVIP TEPQDGILKN LHTNTTHTEG  600
TIVTKPDFRE AKTSLMNSGI DPSQRMVNGE QVAHLTNLSA SLVQLFGNGQ QLPQLYAALN  660
SNNPSGTPSF TSGSVTSTIL PDAVIGPHKH YDPIQDGTDS RRPEVSNNTS AVLTNNTAKA  720
SDSDGKPEIQ LKNITPSSFP VISDTTDCKQ AGGLVEETNL TRQLLTSLEP NPSSKATKGK  780
NELKSGENMK AEEETLKAEE TIKVEETDPL DGEDKEGAND GKKNKDAKGV RAFKFALVEF  840
VKELLKPTWK DGQIGKDAYK TIVKKVVDKV TGTMQGANIP QTQEKIDHYL SFSKAKLTKL  900
VQAYVEKSQK G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RSRSRSRGR
2147157RSRSRSRGRSR
3277286RDKETDRRRR
4282287DRRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017747.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017748.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017749.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_024017750.10.0zinc finger CCCH domain-containing protein 38
TrEMBLA0A2P5E9L20.0A0A2P5E9L2_TREOI; Zinc finger, CCCH-type
STRINGXP_010090865.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-12C3H family protein